Gene detail

Gene detail information of Glyur000145s00010133

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G17540.1	2.00E-05	F-box and associated interaction domains-containing protein
NR	KEH34218.1	1.68E-22	F-box and associated interaction domain protein [Medicago truncatula]
Swissprot	tr\|Q9SZ95\|FB224_ARATH	1.00E-06	Putative F-box protein At4g09790
trEMBL	tr\|A0A072UYM2\|A0A072UYM2_MEDTR	6.00E-23	F-box and associated interaction domain protein {ECO:0000313\|EMBL:KEH34218.1}

Sequence

Transcript Sequence

>Glyur000145s00010133.1
ATGACGATGAGCCACAAATTTGAGAGTGATGAATGCAACAATCAGGTGAAGCTTTTCAAGCTTCCTCTTCCCGATGCCGAATTAGTTTTGGAGAATAAATATGAGAGATTTGACAACACTTTTGCACTAATACCAATATGGGCTGGTATTGGCTTCCAACCTGAAACCAATGAATATAAGGTGATAAGAATGTGGGAGCAAATGGGTGCTCCAAGAACACGAACATGGAGGAATGTTGGAGTTGATCCCAGCGTTTCTATTTGGAGGCTTGAGTTTCCCACTTGTGTGGATGGGGCACTTCACTGGATCAATCTTGATGATTTAAGAGGGAGGCTGTCATTGTCAATATTGTGTTTCAACCTTGAAACAATTCCTCATGTTCCAAGTCTCATCTCACTGAAGGATGCTGTGAAAGGAGATAATATAAAGGTGTTGAATGTCCACTCACGTTTTTACTTCAACATACTTGGTTTTGTTGTGGTGGGAATCATTCTGGTCTTGCACGTTTCTAAGTCTTCCAGGGTCAGAGGATTTCACACCCCAACTGTGAACATAAATTTTTTTTCCTTGCCCGGGTGTGATATCGTCAGGGAATCACAGTCGGGTTCACGGATTGCAGCGTTCAGGGTCAGAGGGTCTGATCTCAGTCTTCAGGGTCAATGTATTTCACGCCACAGGTGTGATATTGGCAAGTCTGTTTTCCGAGTTGTAAAGCAAGAAGCTCAGATACAAATTGTCTCACGGTGGCTAGAGGGACTCATTGGCGACGGCGGTGGCGGGTGGCTGGGCTTGGACGCGCGACGGCGGTGGCTGGCTGGGCCTGGACGTGCGACGGCGGTGGCTAGCTTGGACGCGCGCGCAAAGGCGGAGGATTTGTGGGCTTGCTCCGAACCAGTGAAGGAGAGTGGCGTGGTGGCTTTCTTTGGCTCCATTGATTCTCTTCTCGTCATTGAGCTTGTGAAGAAGATGGTGGTCTCCACCCACCGAGATGCGGCGTTAATTTTGGGGATCCATGAGTTGATTGCGCGCTATTGGGAGCTGGAGCTAGCTCATACCCTGCGACAGGGAAACGGAAGTGGGTGGTTCTGTCTTCTCCTCCGCCAGCGATTAGGACTCTGTGTTTTTGCCTACTGCCTAGTGCCTACTGCCTACTGCCTACTGCCTACTGCCTATGGTTATAATCCCAAGCTCTCTGATTCTGAGTTGTGGCTAGCTATGGAAGGAAAAAGGGACCCAACCGCCTCTGCTAGGGCTACCCAAAAAGGCAAATCCAAACAAATCAAAGATAAAGGTGTTGTTGAGGCAGAGAGTCAACAACTTGAGACTACTATTGCTGATCTTCCCTCTGCCATCACTAGCAACATTCTGCTTCAACTCCCCATTAAGTCTGTTGTCATTTGTAAATCTGTTTGCAGAACATGGAATGCACTGATTTCAGACCCACTTTTTGCCAAACTGCACTTTAAGCATGCACAAGTTCATCTCTTGATTCGGACCAGTGATCCAAAAACTCCCATAATTGGGAAAACTTTTGGACCAATATGCGCTGGTTTTGGCTTCCAGCCTAAAACCAATAAATATAAGGTGATACGAATGTGGGAGTTGTGTGTTCGAAGTCAGACAAATGCCCATAAGTGGATTTCCGAGGGTGTGACAGTTGAGATGCACACACTAGGAACACGAACATGGAGGAATGTTGGAGAAACAATAGAATCCAGAATAGAGAGCGAATATGGTATTGGAGAATCATGGACTAAGGTTTTCACTTTCAGCATTGATACTTTTGGCGGACCACTTCGTTGGCCTTATGCAATTCCTCATGTTCCAAGTCTCATCTCGCTGAAGGATGCTGCGAAAGGAGACAATATAGAGGTGCTGAATGTCCACTCACGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00145	105754	111814	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000145s00010133.1	PF00646.28	F-box	443	483	6.80E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.083
SRR1783600	control	3.988
SRR1783602	moderate drought stress	7.475
SRR1811619	moderate drought stress	7.467

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.862
DRR006520	Root Summer glycyrrhizin high producing strain	1.824
DRR006521	Root Winter glycyrrhizin high producing strain	3.540
DRR006522	Root Winter glycyrrhizin high producing strain	3.153
DRR006523	Root Summer glycyrrhizin low producing strain	0.025
DRR006524	Root Summer glycyrrhizin low producing strain	0.125
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.693
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.970

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.564
SRR2868004	Drought Stress (root)	0.388
SRR2967015	Control (root)	0.619

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.783
SRR9715741	Leaf	0.000
SRR9715739	Root	0.978
SRR9715742	Root	0.000
SRR9715743	Root	0.087

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.004
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.003
SRR8749032	Uninduced	0.001

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.111
SRR8400027	Control - Root	2.387