Gene detail information of Glyur000145s00010131 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20440.4 | 3.00E-55 | small nuclear ribonucleoprotein associated protein B |
| NR | XP_004491358.1 | 4.28E-109 | PREDICTED: small nuclear ribonucleoprotein-associated protein B'-like isoform X1 [Cicer arietinum] |
| trEMBL | tr|G7K3F8|G7K3F8_MEDTR | 3.00E-107 | Small nuclear ribonucleoprotein-associated protein {ECO:0000256|PIRNR:PIRNR037187} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00145 | 99039 | 102118 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000145s00010131.1 | PF01423.17 | LSM | 9 | 84 | 2.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 125.337 |
| SRR1783600 | control | 127.263 |
| SRR1783602 | moderate drought stress | 110.455 |
| SRR1811619 | moderate drought stress | 111.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 90.475 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 89.244 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.634 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 39.252 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 71.094 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 69.737 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.077 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 80.430 |
| SRR2868004 | Drought Stress (root) | 49.356 |
| SRR2967015 | Control (root) | 50.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 53.256 |
| SRR9715740 | Leaf | 55.420 |
| SRR9715741 | Leaf | 48.359 |
| SRR9715739 | Root | 96.832 |
| SRR9715742 | Root | 96.559 |
| SRR9715743 | Root | 88.399 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 101.385 |
| SRR8749028 | MeJA induced 9h | 32.044 |
| SRR8749029 | MeJA induced 9h | 33.391 |
| SRR8749030 | Uninduced | 2.326 |
| SRR8749031 | Uninduced | 0.739 |
| SRR8749032 | Uninduced | 4.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 89.859 |
| SRR8400027 | Control - Root | 70.320 |