Gene detail

Gene detail information of Glyur000145s00010125

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54840.1	4.00E-95	Ras-related small GTP-binding family protein
NR	XP_003519565.1	4.95E-180	PREDICTED: septum-promoting GTP-binding protein 1-like [Glycine max]
COG	YP_008431664.1	3.00E-13	hypothetical protein N186_01315 [Thermofilum sp. 1910b]
Swissprot	tr\|P31583\|RHN1_NICPL	3.00E-16	Ras-related protein RHN1
trEMBL	tr\|I1JJ70\|I1JJ70_SOYBN	2.00E-180	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G45870.1}

Sequence

Transcript Sequence

>Glyur000145s00010125.1
GTTTTGCTCTGGTGGTCCCAAAAACCGAACCCATTCTCATTGTCGATTTTACCAAACTGCCCGCCCATTCCTACGAAGAAACCGAGAAGGAGGCAATACGGAGTGTTTGGGAAACGAAATTGAAAAATACCGGTCAACCGTCCACTATCTTAAACAGCGACCTCCTCAAACCGGTCTAGTATGGTCCCTATTAGTATGATATATAGTTAGTGGGACCGAAAAACCAAACACCCCCACAACACACAAGAAGAAGGAAGAATAAGAAAAAACGAAGAGAGCCAAGTCTATGTGAGAACCAAAACATTCTATGGCAAAAGTCATTCACGAAACAACTAGGAAGATGTCACAGCTATGCCGGAAAATCGTTCAGGTCGATGTTCGGTGGGGAGTGCTACAAAGGGTATCCTTTGTGGGACAGTTTTTCCGGTTCATATGGGATAGGCTTATGGTTTGCTCTGTTGGGAGGCCAGCTAAGTACCGGAGATTATCCCTCCGGGATGATTCTTCTTCGCCGGCGGCCACCGTCGACTACGACGGGTTCCCAACTCTCACCGATAGTGGCGGGTATGACACAGATTCGGATTTGGTGAACCTGAAGATCAGTTTGTTGGGCGATTGCCATATTGGAAAAACTACTTTTGTGATCAAGTATGTAGGGAATGAGCAGGAAAAGAGGAGCCTGCAGATGGAAGGACTAAATCTAATGGACAAGACTTTGTCTGTTCGAGGAGCTCGTATTTCGTTTTGTATATGGGATGTTGCAGGTGACAAAAAGTCCTTGGATCAAATTCCCATGGCTTGTAAAGATGCAGTTGCTATTTTGATTATGTTCGATCTCACCAGTCGTTGTACACTAAATAGTGTTGTTGGATGGTATAGTGAAGCAAGAAAGTGGAATCAGACTGCAATTCCCATTCTAATAGGAACCAAGTTTGACGATTTTGTTAGACTTCCCCCAGATTTGCAATGGACAATTGTAACACAGGCAAGGGCTTATGCGAGGGCGATGAAGGCAACCCTTTTCTTTTCAAGTGCAACCCACAATATAAATGTGAACAAAATTTTCAAGTTCATCATGGCCAAGCTCTTTAACTTGCCATGGACGGTAGAACGAAATTTGACTGTTGGAGAACCCATTATTGACTTCTGATATGTTCTTCACACTATTGATGATTCCTATATGTACATAGAAGCAGAGAGGAGAAGAACAAGCAAAAAAAAAAAAAAACAAAGGAAAGAAAGAAAGAAAACAAGTCGTACTTTTCATATTGACCAAGAATGATTAATCAATCGCCATTCACCACCTAGGTACCTAATTTACGTGTTTTTCTATAGGCCATTTTGACTACATCATTAGAGGGTGAGAAGCTGAATGGTATTGGTATCCATTCCTAGTTGAGTTCCTCCATGTTGTGGCTGAGACCAAAGNCAAAGGTATTTGATATTTGTACATTTGCTATGTAAGAAATGTGTTCTCAATTAATGTTTATAGCATTATCCTAGAGCAAAGGAAGGAGGAGAAGAGAGAGAGATACACGGATCAAGATGACAATAATATTTTGTTCTTTCCATAGTCTAGCTTGCTATTTTTTTGTTTAATTTGTTTTTCTCTCATTGGAAAAGGATTTGTATACATGATTTACAAATGGTAAAAGGGGCCTCCCCTAGCTAATTTCTTCAAAACTTAGCACCTTGGTTACTCTTGTAGTATATTTCATTAACAAACAATAATATTCATGAAATAAGATTGTCTCTAGTCTCTAGATAAAAATTTGTGTCACTTTCCCTCGTGATGTATAACATGACGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00145	75163	78458	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component
GO:0005622 intracellular

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000145s00010125.1	PF08477.8	Miro	97	210	5.80E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.390
SRR1783600	control	9.355
SRR1783602	moderate drought stress	9.321
SRR1811619	moderate drought stress	9.436

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.863
DRR006520	Root Summer glycyrrhizin high producing strain	31.541
DRR006521	Root Winter glycyrrhizin high producing strain	12.593
DRR006522	Root Winter glycyrrhizin high producing strain	12.120
DRR006523	Root Summer glycyrrhizin low producing strain	46.759
DRR006524	Root Summer glycyrrhizin low producing strain	46.027
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.692
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.298

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	33.364
SRR2868004	Drought Stress (root)	54.239
SRR2967015	Control (root)	45.600

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.202
SRR9715740	Leaf	30.552
SRR9715741	Leaf	44.754
SRR9715739	Root	4.333
SRR9715742	Root	27.252
SRR9715743	Root	21.692

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	131.849
SRR8749028	MeJA induced 9h	58.095
SRR8749029	MeJA induced 9h	107.578
SRR8749030	Uninduced	100.606
SRR8749031	Uninduced	120.955
SRR8749032	Uninduced	120.167

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	33.728
SRR8400027	Control - Root	32.720