Gene detail information of Glyur000145s00010112 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G50740.1 | 5.00E-27 | Transmembrane proteins 14C |
| NR | XP_003617491.1 | 8.70E-69 | hypothetical protein MTR_5g092160 [Medicago truncatula] |
| Swissprot | tr|O64847|U136_ARATH | 1.00E-11 | UPF0136 membrane protein At2g26240 |
| trEMBL | tr|B7FH11|B7FH11_MEDTR | 3.00E-69 | Uncharacterized protein {ECO:0000313|EMBL:AFK35581.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00145 | 20472 | 22188 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000145s00010112.1 | PF03647.8 | Tmemb_14 | 4 | 105 | 4.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 30.639 |
| SRR1783600 | control | 31.104 |
| SRR1783602 | moderate drought stress | 17.991 |
| SRR1811619 | moderate drought stress | 17.917 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 41.912 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 42.032 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 56.892 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 55.256 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.915 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.372 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 29.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 188.843 |
| SRR2868004 | Drought Stress (root) | 202.294 |
| SRR2967015 | Control (root) | 181.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 103.817 |
| SRR9715740 | Leaf | 103.134 |
| SRR9715741 | Leaf | 116.170 |
| SRR9715739 | Root | 79.834 |
| SRR9715742 | Root | 72.830 |
| SRR9715743 | Root | 72.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 159.784 |
| SRR8749028 | MeJA induced 9h | 73.813 |
| SRR8749029 | MeJA induced 9h | 119.445 |
| SRR8749030 | Uninduced | 64.333 |
| SRR8749031 | Uninduced | 44.130 |
| SRR8749032 | Uninduced | 74.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 130.906 |
| SRR8400027 | Control - Root | 127.090 |