Gene detail

Gene detail information of Glyur000144s00012253

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G22380.1	4.00E-57	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein
NR	XP_004139318.1	1.41E-85	PREDICTED: NHP2-like protein 1-like [Cucumis sativus]
COG	YP_007687287.1	9.00E-22	LSU ribosomal protein L7AE [Thermoplasmatales archaeon BRNA1]
Swissprot	tr\|Q9LEY9\|NHP2_ARATH	6.00E-21	H/ACA ribonucleoprotein complex subunit 2-like protein
trEMBL	tr\|A0A0A0LF58\|A0A0A0LF58_CUCSA	5.00E-86	Ribosomal protein l7ae {ECO:0000313\|EMBL:KGN60670.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00144	303017	305757	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0042254 ribosome biogenesis

cellular_component

GO:0005730 nucleolus

GO:0030529 intracellular ribonucleoprotein complex

molecular_function
GO:0003723 RNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000144s00012253.1	PF01248.21	Ribosomal_L7Ae	22	111	5.00E-26

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	409.892
SRR1783600	control	411.552
SRR1783602	moderate drought stress	361.662
SRR1811619	moderate drought stress	360.802

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	526.396
DRR006520	Root Summer glycyrrhizin high producing strain	520.047
DRR006521	Root Winter glycyrrhizin high producing strain	385.138
DRR006522	Root Winter glycyrrhizin high producing strain	375.637
DRR006523	Root Summer glycyrrhizin low producing strain	212.953
DRR006524	Root Summer glycyrrhizin low producing strain	213.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	54.207
DRR006526	Leaf Summer glycyrrhizin high producing strain	53.719

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	189.443
SRR2868004	Drought Stress (root)	131.844
SRR2967015	Control (root)	133.423

SRA Experiment	Description	TPM
SRR9715738	Leaf	71.553
SRR9715740	Leaf	96.192
SRR9715741	Leaf	90.398
SRR9715739	Root	620.089
SRR9715742	Root	476.758
SRR9715743	Root	498.809

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	298.976
SRR8749028	MeJA induced 9h	163.171
SRR8749029	MeJA induced 9h	235.188
SRR8749030	Uninduced	54.317
SRR8749031	Uninduced	21.836
SRR8749032	Uninduced	88.818

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	354.613
SRR8400027	Control - Root	323.729