Gene detail information of Glyur000144s00012250.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G52600.1 | 4.00E-71 | Peptidase S24/S26A/S26B/S26C family protein |
| NR | XP_002303254.1 | 7.14E-98 | signal peptidase family protein [Populus trichocarpa] |
| COG | YP_184450.1 | 7.00E-14 | signal peptidase I [Thermococcus kodakarensis KOD1] |
| trEMBL | tr|B9GWC4|B9GWC4_POPTR | 3.00E-98 | Signal peptidase family protein {ECO:0000313|EMBL:EEE78233.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 291580 | 296255 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13280 | SEC11, sipW | EC:3.4.-.- | Protein export | map03060 |
| Protein export | map03060 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.358 |
| SRR1783600 | control | 2.411 |
| SRR1783602 | moderate drought stress | 0.990 |
| SRR1811619 | moderate drought stress | 0.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.614 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.677 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.158 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.987 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.335 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.141 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.709 |
| SRR2868004 | Drought Stress (root) | 6.692 |
| SRR2967015 | Control (root) | 7.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.988 |
| SRR9715740 | Leaf | 3.247 |
| SRR9715741 | Leaf | 4.710 |
| SRR9715739 | Root | 0.876 |
| SRR9715742 | Root | 1.724 |
| SRR9715743 | Root | 2.231 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.568 |
| SRR8749028 | MeJA induced 9h | 14.943 |
| SRR8749029 | MeJA induced 9h | 6.167 |
| SRR8749030 | Uninduced | 16.566 |
| SRR8749031 | Uninduced | 8.253 |
| SRR8749032 | Uninduced | 6.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.030 |
| SRR8400027 | Control - Root | 5.599 |