Gene detail

Gene detail information of Glyur000144s00012240.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G47070.1	squamosa promoter binding protein-like 1
NR	XP_003518623.1	PREDICTED: squamosa promoter-binding-like protein 12-like [Glycine max]
Swissprot	tr\|Q9SMX9\|SPL1_ARATH	Squamosa promoter-binding-like protein 1
trEMBL	tr\|I1JBB8\|I1JBB8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G01160.1}

Sequence

Transcript Sequence

>Glyur000144s00012240.1
GCCTATAGTGTGGGAGTGTACCATAACAGAATTTCACACCATTCTCTCTCCCAGAACAAAAACAAAGGAAAAAAAAATTTACATTCACAAGTTCACAACACCATCGTCGTCATCATCAACAACAACGCCGTTTCCGTCCACAGAACCTGTTGGCCATTTGCGTGTCGCACTTTCCGACATTCACTCACCGCCGATCTGCTTTGCTTCTATCACTACTCCTCTGACGTACACCTCAGTCATTGACTTGTGAAATTGGAAACGTTGGTGATTAGTTGCTTCTACTTGGCTATGTGGATTACCCTTAATTGGAACCATGGTTGCGTGCGTGTTCTCTTTCTGGACTGTTGGGGATGAACTGAGGCTCATTTCACTGTGATTCTGTGCTGTGAATTTCGTACTTCAACTGAATTTAGAGGTAGTTATTTGTGTCGAGGAGTAATAATTGGATTAAGATTGGGAGTTATTGGTGGTGATTATGGAGGCTAGATTGGGTGCCGAAGCTTATCATTTTTATGGTGTGGGTGCTCCCTCGGATTTGAGGGGTATGGGGAAGAGGCCCTTAGATTGGGATTTGAATGATTGGAGATGGGATGGTGATTTGTTCATAGCTAGCCGGGTGAATCAGGTGCCAGCAGATGGCGTGGGAGTGGGACAACAGTTTTTCCCACTTGGGTCTGGGATCCCGGTGGCCGGGGGTTCCTCCAACAGCTCTTCTTCGTGTTCCGAGGAAGGAGATCTTGGGAATCCCAAGGGGAATAAAGAAGGGGAGAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGGTTTGAACGAGGAAGCAGGTACCCTTAGCTTAAAACTTGGTGGGCATGCTTCTCCGGCGGTGGAAAGGGAGATTGCGAGCTGGGATGGTATGAATGGGAAGAAAAGCAGAGTAGCTGGAGGTTCTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGTGATGCAGATCTGAGCAGAGCTAAGGATTATCACAGACGTCATAAAGTTTGTGAGATGCACTCCAAGGCTAGTAGGGCACTTGTTGGAAATGCAATNCAGAGGTTCTGTCAGCAATGTAGTAGATTTCACATTCTTCAAGAATTCGATGAAGGAAAGAGAAGCTGTCGAAGACGCCTGGCAGGCCATAACAAACGAAGAAGGAAAACAAATAATGAAGCTGTTCCTAATGGGAGTTCTGTAAATGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGATCAGATCAGACTACAGATCAGGATCTACTAGCTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGGTGAACAAGGGGGCAAAAATTTGTCGAACCTTTTGCAGGAACCAGAGAATTTGTTGAGAGAAGGGGGTTCTTCGAGGCAGTCAGAGATGGTGTCAACTTTGTTCTCCAATGGTTCTCAAGGCTCTCCAACTGTTATAAGACATCATCAAACTGTATCTATGAATAAAATGCAACAAGAAGCGATTCATGCACATGATGCTGGGGCTGCTGATCAGCAACTCATATCTTCGATAAAGCCCACCATTTCAAACAGTCCTCCGGCTTACTCAGAAGCCAGAGATAGTACGGCACAAATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCCGATGATGGTACGGAAGATCTAGAAAGATTGCCTGTCTCTACAAATCTTGGCACTAGCTCTCTTGATTACCCATGGACACGACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCCAATGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAGCTCTTCGGTAAAGAGCCAAATGATTTTCCACTTGTACTTAGAGCACAGATTCTTGATTGGTTATCCCACAGTCCTACTGATATCGAGAGCTACATTCGGCCTGGTTGTATTGTTTTGACTATTTATCTGCGTCAGGCTGAGGCCATGTGGGAGGATCTTTGCTATGATCTGACTTCCAGTTTGAGTAGGCTGCTGGATGTCTCAGATGATACTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAAATGGCATTCATTTTCAATGGTCAAGTTGTCATAGATACATCACTACCTTTCAGAAGTAACAATTATAGCAAGATTTTGACAGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATACGCCCTGCCACTAGGTTAATGTGTGCTTTGGAAGGAAAATATCTGGTCTGTGAAGATGCTCAAGAGTCAATGGATCAATACACCAAGGAGCTTGATGAACTTCACTGCATCCAGTTTTCATGTTCTGTCCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTCCCTTTCATAGTGGCAGAGGAGGATGTTTGCTCAGAGATTCGTGTACTTGAGCCTCTACTAGAATTAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAAATTAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAAATCTAGGATGGTTCACTTGAACTCTAGTGTTGAACTCTTTCCATTAAAACGGTTCAAGTGGCTTATGGAGTTTTCTATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACCTACTGCTTGATGAATCTGTGGATACAGGAGATCACCCTACCCTTTATCAAGCACTTTCAGAGATGGGCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGCTAGTGGAGCTGCTTTTGAGATATGTTCCTGAGAATATATCTGATAAACTAAGACCTGAAGACAAGGCACTAGTTGATGGAGAGAAACAGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCTGGTTTAACNCCACTNCATATAGCAGCNGGGAAAGATGGTTCTGAGGATGTACTAGAGGCTTTAACTAATGATCCTTGCATGGTGGGAGTTGAGGCATGGAAGAATGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGTTTACGTGGCCATTATACTTACATTCGCTTAGTGCAGAAAAAAATTAACAAGAGACAAGGAGNAGCAGCTCATGTAGTGGTTGACATTCCCAGCAATCTGACAGACANCAATACAAACCAGAAGCAAAATGAGTCAACCACTACCTTTGAGATTGCAAAAGCTGAAGGAAGACGTGGCCAAGGGCACTGTAAACTTTGTGATAATAAACTTTCTTGTAGAACTTCAGTAGGCAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCGTAGCAGCAGTCTGTGTTTGTGTGGCCCTTCTGTTTAAAAGCTCACCCGAAGTTCTATACATGTTCCGACCCTTCAGATGGGAATCGTTGGATTTCGGAACAAGCTAAGGTCCATTAACTTTGAAGGTAATAAAACTTGATAGGTAATGTGAAGATGCGTTCATAGACCCAGTGACCGAGATTTAGGACTGGTTCTTTGTATTGGCTAAATTGTGCAATATTATTTACATATTTGTGTTGTCTTTCTATGGATTTCCTTTTACAATGTATGTGAACTCAACTTTTCATAAAACCCAATTTGGTAGGGTCCTTTGTAATTTAANTGTAATACTTGAATGTTA

Protein Sequence

>Glyur000144s00012240.1
MEARLGAEAYHFYGVGAPSDLRGMGKRPLDWDLNDWRWDGDLFIASRVNQVPADGVGVGQQFFPLGSGIPVAGGSSNSSSSCSEEGDLGNPKGNKEGEKKRRVIVLEDDGLNEEAGTLSLKLGGHASPAVEREIASWDGMNGKKSRVAGGSSNRAVCQVEDCDADLSRAKDYHRRHKVCEMHSKASRALVGNAXQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNNEAVPNGSSVNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLAHLLRSLASQNGEQGGKNLSNLLQEPENLLREGGSSRQSEMVSTLFSNGSQGSPTVIRHHQTVSMNKMQQEAIHAHDAGAADQQLISSIKPTISNSPPAYSEARDSTAQIKMNNFDLNDIYIDSDDGTEDLERLPVSTNLGTSSLDYPWTRQDSHQSSPPQTSGNSDSASAQSPSSSNGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAMWEDLCYDLTSSLSRLLDVSDDTFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRAQFSVKGVNLIRPATRLMCALEGKYLVCEDAQESMDQYTKELDELHCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEIRVLEPLLELSETDPDIEGTGKIKAKSQAMDFIHEMGWLLHRSQLKSRMVHLNSSVELFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLDESVDTGDHPTLYQALSEMGLLHRAVRRNSKQLVELLLRYVPENISDKLRPEDKALVDGEKQSFLFRPDVVGPAGLTPLHIAAGKDGSEDVLEALTNDPCMVGVEAWKNARDSTGSTPEDYARLRGHYTYIRLVQKKINKRQGXAAHVVVDIPSNLTDXNTNQKQNESTTTFEIAKAEGRRGQGHCKLCDNKLSCRTSVGRSMVYRPAMLSMVAVAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00144	215418	222772	-

Gene family

Gene family	subfamily
Transcription Factors Family	SBP
EAR motif-containing Proteins	SBP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000144s00012240.1	PF03110.9	SBP	156	233	1.40E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	39.854
SRR1783600	control	39.883
SRR1783602	moderate drought stress	46.602
SRR1811619	moderate drought stress	46.262

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.967
DRR006520	Root Summer glycyrrhizin high producing strain	43.753
DRR006521	Root Winter glycyrrhizin high producing strain	24.694
DRR006522	Root Winter glycyrrhizin high producing strain	23.867
DRR006523	Root Summer glycyrrhizin low producing strain	60.779
DRR006524	Root Summer glycyrrhizin low producing strain	60.708
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.633
DRR006526	Leaf Summer glycyrrhizin high producing strain	30.286

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	69.742
SRR2868004	Drought Stress (root)	81.104
SRR2967015	Control (root)	77.936

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	59.955
SRR9715740	Leaf	61.104
SRR9715741	Leaf	70.095
SRR9715739	Root	18.183
SRR9715742	Root	85.454
SRR9715743	Root	71.209

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.791
SRR8749028	MeJA induced 9h	42.566
SRR8749029	MeJA induced 9h	23.551
SRR8749030	Uninduced	16.969
SRR8749031	Uninduced	9.581
SRR8749032	Uninduced	9.430

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.248
SRR8400027	Control - Root	68.442