Gene detail information of Glyur000144s00012237 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06420.1 | 4.00E-46 | Ubiquitin-like superfamily protein |
| NR | XP_007145111.1 | 1.57E-76 | hypothetical protein PHAVU_007G210800g [Phaseolus vulgaris] |
| Swissprot | tr|Q8S925|ATG8H_ARATH | 3.00E-58 | Autophagy-related protein 8h |
| trEMBL | tr|V7BHW1|V7BHW1_PHAVU | 6.00E-77 | Autophagy-related protein {ECO:0000256|RuleBase:RU004384} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 205677 | 207557 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000144s00012237.1 | PF02991.11 | Atg8 | 15 | 118 | 7.40E-45 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.311 |
| SRR1783600 | control | 48.626 |
| SRR1783602 | moderate drought stress | 84.803 |
| SRR1811619 | moderate drought stress | 84.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 50.108 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 49.830 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 230.604 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 224.376 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 72.879 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 72.458 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 42.754 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 74.262 |
| SRR2868004 | Drought Stress (root) | 122.636 |
| SRR2967015 | Control (root) | 135.276 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 73.469 |
| SRR9715740 | Leaf | 60.876 |
| SRR9715741 | Leaf | 100.116 |
| SRR9715739 | Root | 17.448 |
| SRR9715742 | Root | 12.377 |
| SRR9715743 | Root | 13.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 87.171 |
| SRR8749028 | MeJA induced 9h | 98.666 |
| SRR8749029 | MeJA induced 9h | 116.147 |
| SRR8749030 | Uninduced | 95.306 |
| SRR8749031 | Uninduced | 135.190 |
| SRR8749032 | Uninduced | 169.045 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 84.637 |
| SRR8400027 | Control - Root | 75.974 |