Gene detail information of Glyur000144s00012233 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01883.1 | 7.00E-32 | Polyketide cyclase / dehydrase and lipid transport protein |
| NR | XP_003591334.1 | 2.85E-79 | hypothetical protein MTR_1g086340 [Medicago truncatula] |
| COG | YP_007081260.1 | 1.00E-15 | polyketide cyclase / dehydrase family protein [Pleurocapsa sp. PCC 7327] |
| trEMBL | tr|G7IBT4|G7IBT4_MEDTR | 1.00E-79 | Polyketide cyclase/dehydrase and lipid transporter {ECO:0000313|EMBL:AES61585.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 191133 | 195577 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000144s00012233.1 | PF03364.15 | Polyketide_cyc | 83 | 141 | 4.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.735 |
| SRR1783600 | control | 19.984 |
| SRR1783602 | moderate drought stress | 20.703 |
| SRR1811619 | moderate drought stress | 20.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 52.793 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.671 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.421 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.180 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 70.512 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 71.788 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 62.368 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 62.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.258 |
| SRR2868004 | Drought Stress (root) | 35.938 |
| SRR2967015 | Control (root) | 42.219 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 85.752 |
| SRR9715740 | Leaf | 77.217 |
| SRR9715741 | Leaf | 102.857 |
| SRR9715739 | Root | 41.200 |
| SRR9715742 | Root | 41.594 |
| SRR9715743 | Root | 58.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.581 |
| SRR8749028 | MeJA induced 9h | 28.199 |
| SRR8749029 | MeJA induced 9h | 31.782 |
| SRR8749030 | Uninduced | 31.726 |
| SRR8749031 | Uninduced | 25.872 |
| SRR8749032 | Uninduced | 34.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.128 |
| SRR8400027 | Control - Root | 30.369 |