Gene detail

Gene detail information of Glyur000144s00012229.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26751.1	0	shaggy-related kinase 11
NR	KHN00229.1	0	Glycogen synthase kinase-3 like MsK-3 [Glycine soja]
COG	YP_008149401.1	1.00E-24	hypothetical protein SCE1572_14835 [Sorangium cellulosum So0157-2]
Swissprot	tr\|P51138\|MSK2_MEDSA	0	Glycogen synthase kinase-3 homolog MsK-2
trEMBL	tr\|I1JBC5\|I1JBC5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G01220.1}

Sequence

Transcript Sequence

>Glyur000144s00012229.1
GCTTATTTTTCATTGAGCGGTCAAAAGAGNGGAAAAAGGACATGTGTTGTATTGACTATGGGATGAGATAAGAAGAGAGTCGCGAACACCACAGAACAAAAACATCGTCAATGATTTGCATTTGTCGGATCTTCTCTTTTATTCCCTTATCTCCGTTTTCACTCTTTTGTCTCTTCTCTTGTTTCCGAATCCACACCCTGAATCCCTTGTTCACATCCCACAGTTTCCCCTGAATCAAGATCCATTTTGCTGCCACATTTACTTTTGAATATCTAGTTTTCCTCTAGACAACGGTCTGTATGACCTAAACTATTNTTTGAGGTAGTTGAATTGAAGCTGCAACGAGATCTTACTGAACTTCTTTGCCTGAGGTGATGGCATCGGCGGGTGTAGCACCTGCTCCTGCTTCTGGAGTAAGGGATGNAAATGCAAGTTCAGTTGCTGCTGTTGATAGGTTGCCTGATGAGATGCATGNCATGAAAATTAGGGATGACAAGGAAATGGAAGCAGCTGTGGTAGACGGAAATGGGACTGAAACAGGACATGTAATTGTCACTACCATTGGCNGTAAAAATGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCNCGTTGTTGGACAAGGTTCATTTGGTGTAGTTTTCCAGGCTAAGTGCTTGGAGACAGGTGAAACCNTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCACCCCAATGTTGTAAATTTGAAGCATTGTTTCTTTTCAACAACTAAAAAAGATGAGCTTTATCTTAACCTGGTACTTGAGTATGTTCCTGAGACTGTCCATCGGGTGATCAGACACTACAGCAAAATGAATCAAAGGATGCCATTGATATATGTAAAACTTTATTTTTACCAGATATGTAGAGCACTAGCTTATATTCACAACTGTGTTGGAGTGTCTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCATCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTCAAAGGTGAACCGAACATATCTTACATCTGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTCGGTGCAACTGAGTATACCACATCCATTGACATTTGGTCAGCTGGTTGTGTNCTTGGAGAACTATTGCTTGGCCAGCCTCTTTTTCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAGATTATCAAGGTTTTAGGTACCCCGACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACTGAGTTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAGCGTATGCCACCTGAAGCTGTGGATCTCGTCTCAAGACTACTGCAATACTCACCAAATCTTCGAAGCACAGCTTTGGAGGCCCTGATTCATCCATTCTTTGATGAACTGCGTGANCCAAATACCCGCTTACCAAATGGCCGCTATCTTCCTCCTTTATTTAACTTCGAAGCCAGTGAACTCAAGGGAGTGCCTGCTGAAATACTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGGGTCATAGTGTTCTCTGATGTAAATATTATCTACTCCCTGCCTGTAAAACTGTATCTAGTCTGTTTCAGGTTGTTAATAGTCCCTCCCTCCTTTTGTCCTTTGTTCTATTAATTTGTTTGTACCCTTTCAGCCCAAGAAAACCACTCCACCTTCCAATTTGTTATTTTCCTCGCTGCCTGTAGAAGACTGTTTGAGANAAAGCTTCAAGTTGATTTCTCTCGATTGTTTTCTTGACCTTCAACGTTTAACAGGTTGTATTAAATATTAACTAGAACCTTTGCTTATTCAAGTNATAGACTAGATCACCATTACAATGTGATCCAGTTAGGGGATGTTTTGAAGCTTGCTTGGTATTCCACCCTTAATTATGGGAAGTTTGCTTTGTAAGATAGTCTTGCTTTCAAGGAATTAGTAATTTGTTACTCATATTCTCTTAATAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00144	172852	177007	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000144s00012229.1	PF00069.20	Pkinase	80	358	1.10E-60

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.686
SRR1783600	control	44.788
SRR1783602	moderate drought stress	49.131
SRR1811619	moderate drought stress	48.794

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.548
DRR006520	Root Summer glycyrrhizin high producing strain	30.755
DRR006521	Root Winter glycyrrhizin high producing strain	59.142
DRR006522	Root Winter glycyrrhizin high producing strain	58.222
DRR006523	Root Summer glycyrrhizin low producing strain	41.038
DRR006524	Root Summer glycyrrhizin low producing strain	40.259
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.017
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.122

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.936
SRR2868004	Drought Stress (root)	69.127
SRR2967015	Control (root)	80.795

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.552
SRR9715740	Leaf	38.718
SRR9715741	Leaf	47.270
SRR9715739	Root	22.422
SRR9715742	Root	36.814
SRR9715743	Root	34.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	34.435
SRR8749028	MeJA induced 9h	48.971
SRR8749029	MeJA induced 9h	58.990
SRR8749030	Uninduced	44.507
SRR8749031	Uninduced	88.511
SRR8749032	Uninduced	90.778

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	82.996
SRR8400027	Control - Root	80.700