Gene detail information of Glyur000144s00012228 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62260.1 | 3.00E-56 | Protein phosphatase 2C family protein |
| NR | XP_004495879.1 | 2.22E-131 | PREDICTED: probable protein phosphatase 2C 49-like [Cicer arietinum] |
| Swissprot | tr|Q3EAF9|P2C49_ARATH | 8.00E-73 | Probable protein phosphatase 2C 49 |
| trEMBL | tr|I1L7L4|I1L7L4_SOYBN | 4.00E-130 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G01270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 169768 | 171438 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000144s00012228.1 | PF00481.16 | PP2C | 94 | 205 | 2.70E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.333 |
| SRR1783600 | control | 27.495 |
| SRR1783602 | moderate drought stress | 26.871 |
| SRR1811619 | moderate drought stress | 25.924 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 111.719 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 111.918 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 29.776 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 30.105 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 152.993 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 151.656 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 82.339 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 81.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.321 |
| SRR2868004 | Drought Stress (root) | 91.381 |
| SRR2967015 | Control (root) | 111.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 161.932 |
| SRR9715740 | Leaf | 128.242 |
| SRR9715741 | Leaf | 237.887 |
| SRR9715739 | Root | 101.754 |
| SRR9715742 | Root | 183.760 |
| SRR9715743 | Root | 174.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 96.131 |
| SRR8749028 | MeJA induced 9h | 193.559 |
| SRR8749029 | MeJA induced 9h | 120.570 |
| SRR8749030 | Uninduced | 126.350 |
| SRR8749031 | Uninduced | 151.310 |
| SRR8749032 | Uninduced | 68.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 57.314 |
| SRR8400027 | Control - Root | 79.482 |