Gene detail information of Glyur000144s00012218.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49620.1 | 5.00E-36 | myb domain protein 78 |
| NR | ABR28342.1 | 1.50E-77 | MYB transcription factor MYB61 [Medicago truncatula] |
| Swissprot | tr|Q9LDE1|MY108_ARATH | 2.00E-39 | Transcription factor MYB108 |
| trEMBL | tr|D5FFH7|D5FFH7_MEDTR | 6.00E-78 | MYB transcription factor MYB61 {ECO:0000313|EMBL:ABR28342.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00144 | 111331 | 112594 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000144s00012218.1 | PF00249.26 | Myb_DNA-binding | 24 | 55 | 3.00E-08 |
| Glyur000144s00012218.1 | PF00249.26 | Myb_DNA-binding | 79 | 100 | 5.60E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.984 |
| SRR1783600 | control | 0.903 |
| SRR1783602 | moderate drought stress | 0.886 |
| SRR1811619 | moderate drought stress | 1.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.049 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.669 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 42.160 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 41.054 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.544 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.753 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.158 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.529 |
| SRR2868004 | Drought Stress (root) | 19.097 |
| SRR2967015 | Control (root) | 90.664 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 47.407 |
| SRR9715740 | Leaf | 13.065 |
| SRR9715741 | Leaf | 95.812 |
| SRR9715739 | Root | 3.491 |
| SRR9715742 | Root | 19.299 |
| SRR9715743 | Root | 12.921 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.546 |
| SRR8749028 | MeJA induced 9h | 39.379 |
| SRR8749029 | MeJA induced 9h | 17.386 |
| SRR8749030 | Uninduced | 7.165 |
| SRR8749031 | Uninduced | 2.855 |
| SRR8749032 | Uninduced | 26.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.520 |
| SRR8400027 | Control - Root | 3.464 |