Gene detail

Gene detail information of Glyur000144s00012207.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47240.2	0	AMP-dependent synthetase and ligase family protein
NR	XP_003535896.1	0	PREDICTED: long chain acyl-CoA synthetase 1-like isoform X1 [Glycine max]
COG	YP_004721504.1	8.00E-50	AMP-dependent synthetase and ligase [Sulfobacillus acidophilus TPY]
Swissprot	tr\|O22898\|LACS1_ARATH	0	Long chain acyl-CoA synthetase 1
trEMBL	tr\|I1L7M8\|I1L7M8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G01400.1}

Sequence

Transcript Sequence

>Glyur000144s00012207.1
ATAAAATTCTCAACTCTGTTGTCCGCTTCGCCCTCGATAATCAATCTCACTATGTCCTCACTTCCAAGTTTCAACTAACTAAAGATTTAAAGTCCCACCACCTTAGTTCGAGACAGCGAGAGTTTTACCTTCTACACAATCTGCAACTACTCACTTCACTATACTACTGTGTATAGTTTTGTAACAAAGGAGAATGAAGATGTTTGCAGCTAAGGTTGAGGAAGGAANGGAAGGTAGAAATGGCATGCCATCTGTTGGTCCAGTATACCGTAACCTCCTCTCCCAAAAGGAGTTTCCTCCATTGGATCCTGAATTCAGCACTGCTTGGGATATTTTCAGCGTGTCTGTCAAAAATCACCCTCAAAACCGGATGCTGGGGTGGCGCAAAATTGTTGATGGAAATATAGGACCATACGTGTGGAAGACATACAAGGAAGTTTATGAAGAAGTTATGCATATTGGTTCTGCTTTACGAGCATCTGGTGCCGAACCAGGCTCTCGAATTGGAGTTTATGGATCTAATTGCCCTCAATGGATTGTGGCAATGGAGGCTTGTTCTGCACAAAGCTTTATTTGTGTGCCTCTCTATGACACCCTTGGGTCTGGTGCGGTAAATTTTATCATAGATCATGCAGAAGTAGATTTTGTTTTCGTCCAAGATAAGAAGGTTAAAGAGTACATCTACCATTTGCAGCTTTTGAATCCTGATTGTAAATCCTCTAAGCGACTGAAAGCCATGGTGTGCTTCACTTCAATAACAGAGGAAGAGAAAGTTAAGGCCACCAAAATTGGAATTAAGCCATATTCGTGGGATGAGTTCTTGTACATGGCTCATGACATCTGCACAATAATGTATACAAGTGGGACAAGTGGAGACCCCAAAGGTGTTGAAATATCGCATGAAAACATAGTGGCTTTAGTAAGAGCATTTGATCTTTTCCTGGAACAATTTGAAGACAAGATGACTGTGGATGATGTGTATTTATCCTTCCTCCCTTTAGCTCACATCCTTGATCGCACAATTGAGGAGTACTTTTTTCGTAAGGGTGCATCTGTCGGCTACTATCATGGGGATCTGAATGCCATAAGGGATGATTTGATGGAGTTAAAGCCAACACTGTTTGCTGGTATCAAGAAAGCAGTGGATGACCTAAATCCGGTGAGGAGAAAAGTTTTTGGCTGGCTCTACAACTACAAACTTGGTTGGATGAACAAAGGATACAAACAGAGAGAGGCATCACCTTTAGCAGATCTATTAGCTTTCAGAAAGGTCAAAGCTAGGCTAGGTGGACGGGTTCGACTAATAATATCTGGAGGTGCAGCCTTGAGCTCTGAGGTGGAAGAATTCTTGCGTGTCACTTGTTGTGCCTTTGTATGCCAAGGCTATGGTTTGACCGAAACAATTGGACCAACTACTCTTGGCTTTCCGGATGAAATGTGCATGGTTGGCACTGTTGGTGCTGTATCTATATACAATGAATTGCGGCTAGAGGAGGTTCCAGAGATGGGATACAATCCTCTTGGAAATCCTCCATGTGGTGAAGTATGTGTCAGAGGGAAAGGGGACATAGGAGAAATGCTTCCTAATGGTGTTGTTAAGATTATTGACAGGAAGAAGAATCTTATTAAACTTTCTCAAGGAGAGTATATAGCGCTTGAGCATATGGAAAATGTTTATGGTATCACTCCAATAGTTGAAGATATCTGGGTTTATGGGAATAGCTTCAAGTCAATGCTGGTTGCAGTAGTAGTTCCAAATGAAGAAGTTACCAATAAGTGGGCATATGCAAATGGTCACATGGCTTCTTTCTCCACACTCTGTTCTCTTGACCAATTAAAGAAATATGTGCTATCTGAGCTCAAGTCTACCGCAGAGAGAAACAAGTTAGACTCTAACAGTGGTATCAGGGCCAAGGTTCGATCCGGGCCACCCGTGTGGGGTAGTGGGCTCGATCCAGACCACCCGTGTGGGGTAGTGGGCCATCACCCGTGTGGGGTATTGTCGAGAGTCGATGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00144	43825	49106	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01897	ACSL, fadD	EC:6.2.1.3	Fatty acid metabolism	map01212
			Fatty acid biosynthesis	map00061
			Fatty acid degradation	map00071
			Peroxisome	map04146
			Quorum sensing	map02024
			Adipocytokine signaling pathway	map04920
			PPAR signaling pathway	map03320

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000144s00012207.1	PF00501.23	AMP-binding	52	456	1.20E-65

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.098
SRR1783600	control	1.010
SRR1783602	moderate drought stress	1.004
SRR1811619	moderate drought stress	1.015

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.597
DRR006520	Root Summer glycyrrhizin high producing strain	1.486
DRR006521	Root Winter glycyrrhizin high producing strain	0.174
DRR006522	Root Winter glycyrrhizin high producing strain	0.210
DRR006523	Root Summer glycyrrhizin low producing strain	1.086
DRR006524	Root Summer glycyrrhizin low producing strain	1.156
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.670
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.977

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.624
SRR2868004	Drought Stress (root)	5.984
SRR2967015	Control (root)	2.703

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	92.014
SRR9715740	Leaf	50.823
SRR9715741	Leaf	92.531
SRR9715739	Root	0.600
SRR9715742	Root	4.123
SRR9715743	Root	3.049

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.133
SRR8749028	MeJA induced 9h	0.047
SRR8749029	MeJA induced 9h	0.083
SRR8749030	Uninduced	0.248
SRR8749031	Uninduced	0.385
SRR8749032	Uninduced	0.165

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.858
SRR8400027	Control - Root	5.528