Gene detail

Gene detail information of Glyur000144s00012205.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02390.1	3.00E-163	glycerol-3-phosphate acyltransferase 2
NR	XP_004495891.1	0	PREDICTED: probable glycerol-3-phosphate acyltransferase 2-like [Cicer arietinum]
Swissprot	tr\|Q9FZ22\|GPAT2_ARATH	0	Probable glycerol-3-phosphate acyltransferase 2
trEMBL	tr\|I1L7N0\|I1L7N0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G01420.1}

Sequence

Transcript Sequence

>Glyur000144s00012205.1
ATGGCTAAATTNTTTAGAGCATTTTTCTTCAAATCTCTTTTCTTCTTTTGGTACCGTTTTCTCCTTAGGCAACTCAAGAACCTCANAGTCTTCCACAGAACTATTAGCAACTCCTTTGTAAGTACTACTACAACAACAACACAGATTACATACCAGAAGTTCCCCTCTCTCCTTCATCGCTCAGACCTCAATGACCACACTTTGATCTTTGATGTAGAAAACACCTTGTTGAGATCCTCTTCTCTGTTCCCATACTTCATGCTCGTAGCATTTGAAGCAGGAGGGTTAATTAGAGCCACAATTCTGGTTCTTCTATACCCTTTTGTTTATTTGGCAGGAGAGGAAATGGGGTTGAAGATAATGGTCATGGCATGCTTCTTTGGGATCAAAGCAGAGAGCTTCAGGGTGGGAAGGTCGGTTCTGCCCAAGTTCTTTTTGGAGGATGTTGGTTCAGAAATCTTTGAGGTTCTGAATAGAGGTGGGAAGAAAATGGGTGTCACCAATCTACCCCGAGTAATGGTGGAAAGCTTCTTGAGAGAGTATTTGGAGATTGATTTCGTTGTTGGGAGGGAGATAAAAATGNTATGTGGGTACTACGTTGGGGTTATGGAGGAGAGAAAAACAATGGATGCATTGGAACAAGTTCAAGAAGGAAAAGGGTGTTCAGATATGATTGGAATCACAAGATCAAACAAGATTCGCGACCATGAAATTTTCTCTCCTTGCAAGGAAGTTTATGTTGTTTCAGAAGCTGACAAGAGAAGCTGGCAAAAGCTAGCAAGGGANAGATACCCAAAAGCACTTATTTTCCATGATGGAAGATTGGCTCTAAGACCCACCCCAATGAAGTCTCTGGCGATGTTGATGTGGCTACCGTATGGGGTAATCCTTGCCGTCATTAGGATCTCACTCGCATTCTCACTCCCGTTTCAAATCTCAACCCCCTTGTGTGCATTCACCGGGTTACACCTCACGTCTTCAATAACAACACCCGAAAGCAACAAAAATGAAAACGGCGTCGTCAAAACAAACGGTGGTGGTGGTCACCTTTACGTGTGCAACCACAGGACCCTGTTGGATCCACTCTACATATCGTTCACGCTACAGAAGAAGTTAATCGCCGTCACATACAGCTTGAGTAGGATGTCTGAGATATTGGCGCCAATTAAAACGGTGCGTTTGACAAGGAACCGGGAACATGATGCGAGAATGATGCAGCACCTGCTTGGGCAAGGGGATCTAGTGGTGTGCCCGGAGGGGACCACTTGTAGAGAGCCTTACTTANTGAGGTTCAGCCCTCTGTTCTCTGAGATGTGCGACGATATAACACCCGTCGCTATTGACTGCCACGTCAGCATGTTCCACGGAACAACTGCTGGGGGGCTCAAGTGCCTGGACCCGGTTTTCTTCCTCATGAACCCTTCCCCGGTTTACACGCTTCGGTTGCTGAACCGGGTGTCCCCGGTTGCTGTTAATGTTGATGCCGGTGATCATGAGAGTTCGAGATTTGAAGTGGCTAATCAGGTCCAGACACAGATTGGGAATGCGTTGGGGTTTGAGTGCACCAAGTTCACAAGGAAACACAAGTACCTGATGTTGGCCGGTAATGAAGGCATAGTTGGTTCCAACAGGAGGACTTGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00144	29977	31872	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13508	GPAT	EC:2.3.1.15	Glycerolipid metabolism	map00561
			Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000144s00012205.1	PF01553.16	Acyltransferase	342	433	1.10E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.065
DRR006520	Root Summer glycyrrhizin high producing strain	0.065
DRR006521	Root Winter glycyrrhizin high producing strain	0.051
DRR006522	Root Winter glycyrrhizin high producing strain	0.068
DRR006523	Root Summer glycyrrhizin low producing strain	0.096
DRR006524	Root Summer glycyrrhizin low producing strain	0.067
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.114
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.108

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.446
SRR2868004	Drought Stress (root)	1.160
SRR2967015	Control (root)	1.362

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.197
SRR9715740	Leaf	0.290
SRR9715741	Leaf	1.046
SRR9715739	Root	0.030
SRR9715742	Root	0.900
SRR9715743	Root	0.816

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.236
SRR8749028	MeJA induced 9h	0.163
SRR8749029	MeJA induced 9h	0.686
SRR8749030	Uninduced	0.591
SRR8749031	Uninduced	0.420
SRR8749032	Uninduced	3.321

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.128
SRR8400027	Control - Root	0.016