Gene detail

Gene detail information of Glyur000143s00011235

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41380.1	3.00E-41	CCT motif family protein
NR	XP_003517472.1	7.30E-117	PREDICTED: uncharacterized protein LOC100798428 isoform X1 [Glycine max]
Swissprot	tr\|Q940T9\|COL4_ARATH	1.00E-09	Zinc finger protein CONSTANS-LIKE 4
trEMBL	tr\|K7K589\|K7K589_SOYBN	3.00E-117	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G43001.1}

Sequence

Transcript Sequence

>Glyur000143s00011235.1
ATGTCTTCTGATCTCTACACCTTNGATATTTCTTTCCACAAACATTCAACCCCAGACATGGTCTCCTATGATGGAAGCGGAGACCTTCTGCTTTACTCTGATCCTTACCCTCCTTTCACTGATGTACCTCAAGGGAATTTGAACAATTCTCTTGACCCGTTTCCCTCTTCTCTCTTTTCTTTCTCTCCCCCAAGCACCCACCATGGCTTCTATCAGGCTAACCATGGAGTGAAAAGCGAGGAATGCCAAATGGGTGTGGATTATACCTACAATAAGCACNTTTGCACTGGTGGTGCTGAAACTGAAAGTGAATCCAAGTTAATGCAGAGGAGCTATAGCTGTAACTCTTTTGANGGAAAGCCTGGTTTTTCCTCTGAAGCTAACCGTAACACTCTCATGGATTCCCCAAATTTTCAATGGCATGCCTTGGATTCCCCTGAAAAACGTTTCTTCACAGGGCAAATGAGGAGGGTGTCCAGTGCAGGAGATTTGCAGAAAATGAAAACAACACACACGTCTCAAACGGAGAGCACCTTGTTGGAGGAAGCAAACTTCAAAGTGGGGCGTTACAGTGCCGAAGAAAGAAAAGAAAGAATCTCCAAATACAGAGCCAAGAGAAGCCAGAGGAAGTTCAACAAGATTATTAAGTATGCATGCCGAAAGACACTAGCCGACAATCGAACGCGCATACGTGGCAGATTCGCACGTAACGACGAAACCAGCGAGATTCCAAAAGTTCCGTGTTCAGGTACTTCAACCACAGAAGAATACGAAGACGAGTTCTGGGTTGAGTTGATTGATGGGTTAAACGACGAGCTCCTCAGATAGTAGAGCAGAACAATATGGGGACGGTTATATATGCAGCTCCACAGTTTCAGCTTTGTGCCTTTGGAGTTTTGACAGACAGAACAGAAGCATCTATTTTTCGCCTGATAGGCACTTAACTACGAAACAGCCTTTTGTGAGCCAAAACAAAAACAAAAGGCTTTTCAATTTTAATCTTTCTCACTATTTATCAATAAAGTCATCACTCATATATGGACTGCGAGATGCTACGAAGGTCAAACATAAGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	287632	289130	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011235.1	PF06203.9	CCT	195	239	7.90E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.408
SRR1783600	control	0.370
SRR1783602	moderate drought stress	0.172
SRR1811619	moderate drought stress	0.173

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.654
DRR006520	Root Summer glycyrrhizin high producing strain	0.645
DRR006521	Root Winter glycyrrhizin high producing strain	0.103
DRR006522	Root Winter glycyrrhizin high producing strain	0.095
DRR006523	Root Summer glycyrrhizin low producing strain	8.106
DRR006524	Root Summer glycyrrhizin low producing strain	7.819
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.086
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.086

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.765
SRR2868004	Drought Stress (root)	4.420
SRR2967015	Control (root)	4.594

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.884
SRR9715740	Leaf	0.303
SRR9715741	Leaf	0.486
SRR9715739	Root	0.461
SRR9715742	Root	0.573
SRR9715743	Root	0.897

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.240
SRR8749028	MeJA induced 9h	1.039
SRR8749029	MeJA induced 9h	0.855
SRR8749030	Uninduced	1.605
SRR8749031	Uninduced	0.280
SRR8749032	Uninduced	0.266

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.011
SRR8400027	Control - Root	1.955