Gene detail

Gene detail information of Glyur000143s00011229

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05170.1	9.00E-72	Phosphoglycerate mutase family protein
NR	XP_003611071.1	0	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase [Medicago truncatula]
COG	YP_004961561.1	3.00E-61	hypothetical protein SBI_03309 [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|Q9MAA2\|AT74_ARATH	4.00E-96	Phosphoglycerate mutase-like protein AT74 {ECO:0000305}
trEMBL	tr\|G7KC13\|G7KC13_MEDTR	0	Phosphoglycerate mutase family protein {ECO:0000313\|EMBL:AES94029.1}

Sequence

Transcript Sequence

>Glyur000143s00011229.1
ATGGCAGCACTACCTTTCCCACACTCAGGGTCCCTCCATCCCCCTCTCTCAGTATCTCAACAGAAACTACTTAAAATCAAACCCAATTCCAAGACAAACAAATACTTAATAACCCAATGCTGCCACAGCCAAACAGAGCCCATGGAACTAATTACCAATAACAATGGCCATGCCAGATTTCCAGAGAAGAATCCCCTCATAAACCCTTCAGTCNCAGCCTCCACCGTTGGCTTTGTCCCTCCAAGGCCACGAAGGATAATCCTGGTTAGGCATGGGGAGAGTGAGGGAAACGTGGATGAGAGCGTGTACACAAGGGTACCCGATCCTAAGATAGGCCTCACTGAAAGGGGAAAAGCACAGGCAGAGGAATGTGGGGAGAGGATCAAGAGNATGATTGAGAAGGATGGTGACGAAAATTGGCAACTTTACTTCTATGTTTCCCCTTACAGAAGGACCCTTGAAACGTTGAAGAGCCTTGCTCGTCCCTTCGAACGCTCCAGAATTGCTGGCTTCAGAGAAGAGCCTCGCATTCGAGAACAAGATTTCGGGAATTTTCAAAATAGAGAGAGGATGCGAGTGGAAAAAAAGCTACGCAACCTTTATGGTCGTTTCTTTTACCGGTTCCCAGATGGAGAATCCGCAGCTGATGTATATGATAGAATCACAGGGTTCAGAGAGACACTGAGAGCAGATATTAATATTGGAAGGTATCAGCCACCTGGGGAGAAGAAAGAAGACATGAACTTGGTGATCGTGTCGCACGGTTTAACACTTCGGGTTTTTCTCATGAGGTGGTACAAGTGGACGGTTGAACAGTTCGAAAGACTCAACAACTTGGGCAACGGAAACATGCTCGTCATGGGAAAGGGTTATGGTGGAAGGTATAGCTTACTGATGCATCACGATGAAGCAGAGCTAAGACAGTTTGGATTGAGTGATGAAATGCTGATTGATCAAGAGTGGCATAAATTGGCAAGGCCTGCTGATCTGAATTACGATTGTCCAATGGTGAATTCCTTCTTTCCCCATCTCAGTGAAGAAACAAGGATGGGTCAACAAGTCGATGCACAGGNTACTGAATAGTACATTCTTGTAAACATGCATGATTAATAGAAAAAATGTTGTACCAAGTTATCTAGGAAAAAAATGGTGGAAGAAGTGGATAATTATATATTCCTGATGTATATAGTTCTCGCGCGTGTCAGCTGCTGCATGATCACGTGTGGCTACCTAACTCTCAAATTATTCAGTCACAGTTGCGTAGGATTGGTTTATTAGTTTTCAANTTTGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	266564	268339	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011229.1	PF00300.17	His_Phos_1	85	261	4.40E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.012
SRR1783602	moderate drought stress	0.029
SRR1811619	moderate drought stress	0.029

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.077
DRR006520	Root Summer glycyrrhizin high producing strain	0.082
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.341
DRR006524	Root Summer glycyrrhizin low producing strain	0.341
DRR006525	Leaf Summer glycyrrhizin high producing strain	83.564
DRR006526	Leaf Summer glycyrrhizin high producing strain	82.418

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.098
SRR2868004	Drought Stress (root)	0.125
SRR2967015	Control (root)	0.210

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	121.531
SRR9715740	Leaf	197.122
SRR9715741	Leaf	156.515
SRR9715739	Root	0.000
SRR9715742	Root	0.239
SRR9715743	Root	0.034

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.047
SRR8749030	Uninduced	0.025
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.041

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.094
SRR8400027	Control - Root	0.067