Gene detail

Gene detail information of Glyur000143s00011225.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G11350.1	Protein of unknown function (DUF604)
NR	AES94027.2	transferring glycosyl group transferase [Medicago truncatula]
trEMBL	tr\|G7KC11\|G7KC11_MEDTR	Transferring glycosyl group transferase {ECO:0000313\|EMBL:AES94027.2}

Sequence

Transcript Sequence

>Glyur000143s00011225.1
GGGGAAAAGGAAAACACATTGCAAAAGGCTTATGGTATGGCTCATCCTCATGGTTTCCCTCACCTACTTGGTTTACACTCTCAAGCTCGTTTCCACATCAAGCGCGTGCAACCACGGCCCATTCTCCGTCCACCGCCTCTCTTCCTCTTCATCCTCCCCAATCAATAATGCCAATGCCACCGCCACTGTCACCGGAAAGACGGAGCTCCGGCACGTGGTGTTCGGGATCGCGGCGTCGTCCAAGCTGTGGGAACAGAGGAAGAACTACATAAAGCTTTGGTACAAGGAGAAGAAGATGAGAGGGGTGGTGTGGATCGACGATCGAGTTAAGACCGACCCAAAGGAAGGGCTTCCCCAAGTGAGGATCTCCACCGACACCTCCAATTTCCCTTACACCAACAAGCAGGGACACCGCTCCGCCATTCGAATCTCCCGAATCGTTTCCGAAACGCTGCGTTTGGGGATGAAGGACGTGCGGTGGTTCGTGATGGGTGATGACGACACCGTTTTCGTCACCGATAACCTGCTCAGGATTCTCAACAAGTACGACCACAACCAGTTCTACTACATTGGGAGTTTGTCGGAGAGTCACTTGCAGAACATTTTCTTTTCCTACGGTATGGCCTACGGCGGCGGAGGGTTCGCCATTAGCTACCCTTTGGCTAAGGCTCTGCAGAAAATGCAGGACCGTTGTATTAAGAGATACCCTGGACTCTATGGCTCCGACGATCGAATGCAGGCTTGTATGGCTGAACTCGGTGTTCCACTCACCAAAGAAATCGGTTTTCACCAGTATGATGTGTATGGGAACCTGTTTGGGCTTCTTGCAGCTCATCCTGTGACTCCATTGGTGTCACTGCACCACCTTGATGTGGTTGAGCCAATCTTCCCCAATGTCACCAGAGTAGAAGCCCTTCAACGGCTCACCATACCGATGATTTTTTTTTCTGCAGGGCTCATTCAGCAATCCATCTGCTATGACAAACAAAGGAGCTGGACTTTTTTTTTCTCATGGGGTTTTGCTGTATTTCGCGGGATATTTTCACCCCGCGAAATGGAAATGCCTTCAAGAACATTCCTGAATTGGTATAGAAGAGCAGATTACACTGCATATGCATTCAACACACGCCCGGTTAGCCGAAACCCGTGTCAAAAGCCCTTTGTGTTCTACTTGTCAAAGGCAAAATTCAATTCTACGATGCGACAGACAGTGAGTGAATATGAAAGGCATCGTGTCTTTTTTTTGGAATGCCGGTGGAAGATGGCTGATCCTTCTGCTCTTGACAAAGTAGTGGTTTATAAGAAACCAGACCCGCATCTATGGGATAGAGCTCCAAGGATTTTTTTTTGCAGAATGATGAAGNCGAACAAGAAAGGAACCATGGTGATAGATGTGGGCATTTTTTTTTCTGGTGAGGTCAGCGAACCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	239507	242988	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT31

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011225.1	PF04646.7	DUF604	189	440	5.90E-112

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.293
SRR1783600	control	2.741
SRR1783602	moderate drought stress	2.576
SRR1811619	moderate drought stress	2.473

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.446
DRR006520	Root Summer glycyrrhizin high producing strain	1.354
DRR006521	Root Winter glycyrrhizin high producing strain	0.233
DRR006522	Root Winter glycyrrhizin high producing strain	0.075
DRR006523	Root Summer glycyrrhizin low producing strain	0.463
DRR006524	Root Summer glycyrrhizin low producing strain	0.616
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.272
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.258

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.550
SRR2868004	Drought Stress (root)	1.449
SRR2967015	Control (root)	1.274

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.934
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.267
SRR9715739	Root	1.742
SRR9715742	Root	2.617
SRR9715743	Root	2.415

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.050
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.020

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.650
SRR8400027	Control - Root	6.588