Gene detail

Gene detail information of Glyur000143s00011218

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01370.1	0	MAP kinase 4
NR	NP_001241378.1	0	uncharacterized protein LOC100803024 [Glycine max]
COG	YP_004582424.1	4.00E-23	serine/threonine protein kinase [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|Q39024\|MPK4_ARATH	0	Mitogen-activated protein kinase 4
trEMBL	tr\|C6TG52\|C6TG52_SOYBN	0	Mitogen-activated protein kinase {ECO:0000256\|RuleBase:RU361165}

Sequence

Transcript Sequence

>Glyur000143s00011218.1
AGAATTTCAGCGATGTTCGAAATTATGAATCGGTCGCATTTACCTCCGTATGTAGAAAGAAATCGAGAGCAGGAGCAGCAAGCAACAAGGTGTGAATGAATGNTTTTTGTATTGGGAAATGAAAAAGTCTTGTTGACGGAAACAAACATTGAGCTGAAAAGGAAAAAGGGGGAAGAAGAAAAGAGTGAAATTTGGCNTTGCAGTTAGTTGCTTGCAGACACACAATAATGGGTAGCAAAAGCAAAGAGATAGAGTGGGTAATGACTCACGGAGGTGGATACGTGAAGTACAATGCGTACGGGAACTTGTTCGAGGTGTCCTCCAAGTATGTCCCTCCCATTCGCCCTATCGGTAGAGGCGCTTATGGCCTCGTCTGTTCCGCTGTTAATTCCCATACACACGAGGAAGTTGCCATCAAGAAGATTGGTAACGCATTTGACAACATTATTGATGCTAAAAGGACTCTGAGGGAAATTAAACTCATTCGCCACATGGACCATGAAAATGTCATTGCTATTAGGGATATCATACGACCTCCCCAAAAGGATGACTTTAATGATGTTTACATCGTTTATGAATTGATGGACACTGATCTTCATCAGATAATTCGTTCTGACCAGCCTCTCAACCATGACCATTGTCAGTACTTTTTGTACCAGCTGCTACGGGGGCTGAAATATGTGCATTCAGCTAATGTCTTGCACCGTGATCTAAAGCCAAGTAATTTACTTTTGAATGCGAACTGTGACCTTAAAATTGGGGACTTTGGTTTGGCAAGGACTACTTCNGAAACGGATTTCATGACGGAATATGTTGTTACCAGATGGTACCGAGCCCCAGAATTGCTCCTTAATTGTTCAGAGTATACATCCGCAATTGATGTTTGGTCAGTAGGTTGCATATTTGGTGAAATTATGACCAGAGAACCCTTGTTTCCTGGGAAAGATTATGTTCATCAACTAAGGCTTATAATAGAGTTAATAGGTTCACCTGACGATTCTAGCCTCAGATTTCTCCGAAGCGAAAATGCGCGAAGGTATGTTAGACAGCTTCCGCAGTGCAGGAAGCAAAAACTTTCAGCAAGATTCCCTCAAATGTCAGCTGAGGCTTTGGATCTACTAGAAAAGATGCTTATCTTTGATCCCAACAAACGAGTTACAGTTGATGAGGCACTGTGTCACCCATATCTTTCATCACTTCATGACATCAATGATGAGCCTGTTGCTCCCAGGCCATTCAGTTTTGATTTTGAGCAGCAAGCATGCACCGAAGAGCACATCAAGGAGCTCATTTGTAGGGAATCAGTGAAGTTCAATCCAGATCCACTTTGTCAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	217979	220558	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004707 MAP kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011218.1	PF00069.20	Pkinase	39	321	7.20E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.166
SRR1783600	control	1.158
SRR1783602	moderate drought stress	1.219
SRR1811619	moderate drought stress	1.305

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.243
DRR006520	Root Summer glycyrrhizin high producing strain	0.240
DRR006521	Root Winter glycyrrhizin high producing strain	0.083
DRR006522	Root Winter glycyrrhizin high producing strain	0.081
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.327
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.250

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.699
SRR2868004	Drought Stress (root)	36.176
SRR2967015	Control (root)	29.773

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.818
SRR9715740	Leaf	4.803
SRR9715741	Leaf	3.943
SRR9715739	Root	0.332
SRR9715742	Root	0.512
SRR9715743	Root	0.397

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.583
SRR8749028	MeJA induced 9h	1.530
SRR8749029	MeJA induced 9h	0.747
SRR8749030	Uninduced	3.980
SRR8749031	Uninduced	1.519
SRR8749032	Uninduced	0.369

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.829
SRR8400027	Control - Root	10.459