Gene detail

Gene detail information of Glyur000143s00011216

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G52650.1	1.00E-46	RNA binding Plectin/S10 domain-containing protein
NR	XP_007158528.1	6.71E-122	hypothetical protein PHAVU_002G159600g [Phaseolus vulgaris]
Swissprot	tr\|Q9SW09\|RS101_ARATH	7.00E-78	40S ribosomal protein S10-1
trEMBL	tr\|V7CJZ8\|V7CJZ8_PHAVU	3.00E-122	Uncharacterized protein {ECO:0000313\|EMBL:ESW30522.1}

Sequence

Transcript Sequence

>Glyur000143s00011216.1
GAAGATGAGAATTGAGAAGTCCATTATAAAACAGAGAGAAAGTGGAATTAGGGTTTCTGTNGCAGCAGCAAAAGGATAGAAAGAGTGGGAGTGGTCGCAGAGCTTCGTTTAGTTGCCCCCTTAATCTGCAACAATGATCATTCCGGAGAAGAACCGTAGAGAGATATGCAAATACCTCTTCCAAGAGGGAGTTTGCTTTGCGAAGAAGGACTACAACCTGGCAAAGCACCCAGAGATTGATGTGCCAAATCTGCAGGTGATTAAGCTGATGCAGAGCTTCAAGTCAAGGGAGTACGTGAGGGAGACCTTTGCTTGGATGCACTATTACTGGTTCCTCACCAATGATGGCATTGAGTTCCTCAGGACTTACCTCAACCTTCCCTCTGAAATCGTGCCAGCCACTTTGAAGAAGCAGGCCAAGCCAGCTGGCAGGCCATTCGGTGGCCCACCCGGTGATCGCCCTAGGGGCCCACCTCGCTTCGAGGGAGAAAGGAGATTCGGTGGTGATCGCGATGGGTACCGTGGAGGTCCCCGGGGACCTGGTGGTGACTTTGGGGACAAGGGTGGAGCTCCTGCTGATTACAGACCTTCNTTTGGGGGTCCTGGNGGAAGGCCTGGCTTTGGTCGTGGTGCTGGTGGTTTTGGAGCACCAACTAGTTCAAATATTCCTTAAATGTAATGATTTCTGTTCCAGTTTCTGCAGTTTTGGCTGTCAGTAGAGTCAATAGTATTTCCTCTCCCTNACAAGTTGTTTGATCTGTTTGACATTTTATTTTAATATTCAGTTATTTCTGCAATGAAGATTTTTAATTGTTTTTGCCAAGTAGGATGACNATCTTGTTCATGTTGGATGATAGATCATCGATGGTTTTTGATAGTAAAGATGGATATCCTCTGAGTGGGTAAAGAAAGTGTCGAAAAAGACTTGGGTGTGTTTGATTTGCATTTCCAATCACAAGTTTGCACTGAATAGTTTCTTTGAGGCAAGCATGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	211315	213578	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011216.1	PF03501.10	S10_plectin	3	96	2.30E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	89.584
SRR1783600	control	88.583
SRR1783602	moderate drought stress	71.951
SRR1811619	moderate drought stress	71.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	150.595
DRR006520	Root Summer glycyrrhizin high producing strain	149.380
DRR006521	Root Winter glycyrrhizin high producing strain	77.329
DRR006522	Root Winter glycyrrhizin high producing strain	75.584
DRR006523	Root Summer glycyrrhizin low producing strain	95.503
DRR006524	Root Summer glycyrrhizin low producing strain	95.877
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.107
DRR006526	Leaf Summer glycyrrhizin high producing strain	49.627

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	345.331
SRR2868004	Drought Stress (root)	213.348
SRR2967015	Control (root)	198.749

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	161.517
SRR9715740	Leaf	159.792
SRR9715741	Leaf	136.135
SRR9715739	Root	328.233
SRR9715742	Root	201.432
SRR9715743	Root	227.236

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	262.055
SRR8749028	MeJA induced 9h	90.285
SRR8749029	MeJA induced 9h	135.659
SRR8749030	Uninduced	26.045
SRR8749031	Uninduced	9.538
SRR8749032	Uninduced	35.163

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	273.970
SRR8400027	Control - Root	240.319