Gene detail

Gene detail information of Glyur000143s00011209.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23560.1	3.00E-169	glycosyl hydrolase 9B15
NR	XP_004511554.1	0	PREDICTED: endoglucanase-like [Cicer arietinum]
COG	YP_004908734.1	2.00E-79	putative endoglucanase precursor [Kitasatospora setae KM-6054]
Swissprot	tr\|P22503\|GUN_PHAVU	0	Endoglucanase (Precursor)
trEMBL	tr\|Q43105\|Q43105_PHAVU	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}

Sequence

Transcript Sequence

>Glyur000143s00011209.1
ATGGGTTGCTATTTGTTGGTGATCAGTGTTCTGTTGTTGTGGTTTTCCGTGGCTGATCACAAATATGGACTAGCCATGATGGATGAGGAGTTCATAACAAGAAATTCCTCATCCTCAGCTAATAATTTTGACTATGCAGATGCTCTTGGCAAGGCCATCTTGTTTTTTGAAGGACAACGCTCGGGGAAGTTGCCCACCAGCCAAAGAGTGAAGTGGAGGGGAGACTCTGCTCTCTCTGATGGCAAGCTTCAAAATGTGAATTTGGTTGGAGGATACTACGACGCAGGTGATAATGTCAAGTTTGGGTGGCCGATGGCATTTACGGTCAGCTTATTGAGTTGGGCAGCTGTTGAGTACGAGAGTGAGATATCATCAGTGGGAGATGGAAACGCAGATCACCAATGTTGGGAGCGCCCAGAAGACATGGACACACCGAGAACAGTTTACAAGATTGATGCTAATTCCCCAGGAACTGAGGCTGCAGCTGACTCTGCTGCTGCTCTTTCTGTTGCTTCAATTGTCTTCAAGAAAACAGATGCCAATTATTCCTCCAGGCTATTAAGCCACTCAAAATCACTGTTTGATTTTGCTGACAAGTATAGAGGTTCTTACTCGGCTTCTTGCCCATTCTACTGCTCGTACTCTGGTTACCAGGATGAACTGTTATGGGCTGCTTCTTGGCTATACAAAGCCAGTGGAGAAAGCAAGTACTTGAGCTACACCACAGACAACCAAGGTTGGAGTCAGGCAGTGTCTGAATTCAGCTGGGATAACAAATTTGTTGGAGCTCAGACATTACTAACAGAGGAATTCTACGGTGGGAAGAAGGACTTAGCCAAGATTAAGAGTGACGCTGAATCATTTATATGTGCAGTGATGCCAGGAAGCAGCTCTCTTCAGATTAAAACAACTCCCGGTGGGCTTCTGTATACTAGAGATAGTAGTAATTTGCAATATGCGACGAGCTCAACCATGGTGCTATTCATTTTCTCCAATATCCTAANCAGAAATCATATTGATGGAATCCACTGTGGCTCTAAGCATTTCGCTCCCTCTGAAATTAAAGCCTTCGCAAAAACACAGGTGGACTACATACTAGGAAACAATCCCATGAAGATGTCGTACATGGTGGGATTTGGGAGTAAATTATACCCAAAGCAACTGCATCACAGAGGATCTTCCATCCCTTCAATCAAAGTTCACGCGGCCAAGGTGGGTTGCAGTGATGGTAACTCGGACTATTACTCTTCCCCGAATCCAAATCCAAATACTCATGTGGGTGCCATTGTTGGAGGCCCTGATTCCAATGACCAATTCAGAGATTCCAGATCTGACTACTCTCACACCGAACCTACCACCTATATGAATGCTGCTTTCGTAGCTTCTGTGGCTGCTTTGCTTGAAGAAACCAATAATTTGAGGAGTTTGCAATTTCCCCAAATCGGTGTCGACGGTGATGGGAAGGCTAATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	168532	171986	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH9

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011209.1	PF00759.14	Glyco_hydro_9	44	124	2.50E-31
Glyur000143s00011209.1	PF00759.14	Glyco_hydro_9	125	464	6.40E-109

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.610
SRR1783600	control	0.665
SRR1783602	moderate drought stress	0.310
SRR1811619	moderate drought stress	0.283

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.147
DRR006520	Root Summer glycyrrhizin high producing strain	0.130
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.593
DRR006524	Root Summer glycyrrhizin low producing strain	0.437
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.177
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.188

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.159
SRR2868004	Drought Stress (root)	0.362
SRR2967015	Control (root)	0.373

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.456
SRR9715740	Leaf	0.023
SRR9715741	Leaf	0.194
SRR9715739	Root	0.692
SRR9715742	Root	0.259
SRR9715743	Root	0.177

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.680
SRR8749028	MeJA induced 9h	0.418
SRR8749029	MeJA induced 9h	0.770
SRR8749030	Uninduced	0.972
SRR8749031	Uninduced	1.592
SRR8749032	Uninduced	1.244

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.424
SRR8400027	Control - Root	0.361