Gene detail

Gene detail information of Glyur000143s00011205

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41590.1	3.00E-47	Protein of unknown function (DUF567)
NR	XP_003517483.1	6.37E-117	PREDICTED: protein LURP-one-related 17-like [Glycine max]
Swissprot	tr\|A0MFL4\|LOR17_ARATH	7.00E-60	Protein LURP-one-related 17
trEMBL	tr\|I1JAA0\|I1JAA0_SOYBN	2.00E-117	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G43180.1}

Sequence

Transcript Sequence

>Glyur000143s00011205.1
AAAAATCAGAGCTATTTTATTTTAAACGGCATCCCTGTTCGTTAGTTGTTACTGTGAACAATATTATTATGTGTATATATATGTGCGTGTCCCGTGGCCCCGTTAAAACTGAAGTGAAGGGAATATGTGAGAAAGTGAGAGAGTGTGAATAAGATCACATTCACAGGTCGACCGAGAGAGAGAGACACAGAAGAGATAAAGATCATGATGAGGATGTTTCCTAGGTTCAAATCTCNGTCAAGAGCGGTGCATGAGGAACAAGAGCGTACGGAGGAGGAAAACACATACCCGAGAATCAGATCCAGCGAAGGAAGCTTGTGCACATCCACATCCCTCACAGTTTGGAGGAAATCCCTGGTGATGAGNTGTAAAGGATTCACGGTCATCGATTCCAAAGGAAATCTGGTTTATCGGGTCGACAATTACATTGGGCGCCCCAATCAACTCATTCTCATGGACGCCTCAGGAAAATCCATCCTCACCATGTGCCGCCGCAGGAAGCTTGGATTGTTAGATAGCTGGTTTGTGTATGAAGGGGAATTGNGGAACTTGTCCACGTCACCACAGAGTACCCCAATTTGTTGTGTGAGAAAGCATGTGAACATTTTACACGGAAGCCCCAACGTTCAGGCGTACGTGTACCGTGGAGCCTCGTCACGTTCTTCTGATAACAATAAACGGTGTGTGGCGTTTACTGTGGAGGGTTCCTACGCGCATCGGACGTGTAAGGTGTTGGATGAGTGCAGAGCCGGAGAGGTCGTGGCTGAAATTAAGAGGAAAGAAGCCACTACCAAAAACGTCTCTTTTGGGATTGAGATTTTTCAGTTAGTTGTGTACCCTGGCCTTGATCCTGCCTTTGCAATGTCACTCGTCTTACTCCTTGATCAAATGTTTTCCTAATGTACTTTTCACTATCCCATATATATATATACATATACTCTCTCTCTACTTCATGTATTATTGTTAATATTTATTTTGGGATGATGAAGTGATGCATTTTCAGTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	145350	146465	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011205.1	PF04525.7	Tub_2	42	224	3.50E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.948
SRR1783600	control	6.073
SRR1783602	moderate drought stress	4.727
SRR1811619	moderate drought stress	4.578

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.042
DRR006520	Root Summer glycyrrhizin high producing strain	12.848
DRR006521	Root Winter glycyrrhizin high producing strain	9.059
DRR006522	Root Winter glycyrrhizin high producing strain	8.532
DRR006523	Root Summer glycyrrhizin low producing strain	22.448
DRR006524	Root Summer glycyrrhizin low producing strain	21.991
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.583
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.566

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.669
SRR2868004	Drought Stress (root)	3.903
SRR2967015	Control (root)	6.923

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.012
SRR9715740	Leaf	4.564
SRR9715741	Leaf	3.265
SRR9715739	Root	3.796
SRR9715742	Root	2.877
SRR9715743	Root	3.017

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.889
SRR8749028	MeJA induced 9h	7.874
SRR8749029	MeJA induced 9h	7.339
SRR8749030	Uninduced	3.426
SRR8749031	Uninduced	1.604
SRR8749032	Uninduced	4.686

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.554
SRR8400027	Control - Root	6.687