Gene detail information of Glyur000143s00011199 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G64110.2 | 0 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| NR | XP_004511542.1 | 0 | PREDICTED: ribosome biogenesis ATPase RIX7-like isoform X2 [Cicer arietinum] |
| COG | YP_003816389.1 | 9.00E-58 | AAA family ATPase [Acidilobus saccharovorans 345-15] |
| Swissprot | tr|Q9SEX2|KTNA1_ARATH | 5.00E-61 | Katanin p60 ATPase-containing subunit A1 {ECO:0000255|HAMAP-Rule:MF_03023} |
| trEMBL | tr|K7K596|K7K596_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43230.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00143 | 100700 | 106662 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000143s00011199.1 | PF00004.24 | AAA | 559 | 689 | 2.40E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.719 |
| SRR1783600 | control | 1.689 |
| SRR1783602 | moderate drought stress | 3.110 |
| SRR1811619 | moderate drought stress | 3.004 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.546 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.429 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.005 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.915 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.740 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.740 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.106 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.505 |
| SRR2868004 | Drought Stress (root) | 5.591 |
| SRR2967015 | Control (root) | 4.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.008 |
| SRR9715740 | Leaf | 1.443 |
| SRR9715741 | Leaf | 1.816 |
| SRR9715739 | Root | 0.203 |
| SRR9715742 | Root | 0.891 |
| SRR9715743 | Root | 0.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.958 |
| SRR8749028 | MeJA induced 9h | 1.423 |
| SRR8749029 | MeJA induced 9h | 1.872 |
| SRR8749030 | Uninduced | 3.724 |
| SRR8749031 | Uninduced | 5.912 |
| SRR8749032 | Uninduced | 4.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.486 |
| SRR8400027 | Control - Root | 6.850 |