Gene detail

Gene detail information of Glyur000143s00011198.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23650.1	0	calcium-dependent protein kinase 6
NR	XP_003517491.2	0	PREDICTED: calcium-dependent protein kinase 3-like [Glycine max]
COG	YP_642814.1	4.00E-26	serine/threonine protein kinase [Rubrobacter xylanophilus DSM 9941]
Swissprot	tr\|Q42479\|CDPK3_ARATH	0	Calcium-dependent protein kinase 3
trEMBL	tr\|K7K597\|K7K597_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G43241.1}

Sequence

Transcript Sequence

>Glyur000143s00011198.1
TATTTCTTTAATATATATCTTCTCTATTTATTTTCTCCGTGCGATTATTTTATTTTGAAACATATTCAATAATCAATGCGATTATTATCTTTTGAAACATACTAATCAATGTAATTAATTATCTTGTCAACGTAATCCATCTCACGCGTCAAAGTCCATTTCGCAGCGGATCAAAGTCCATTTTCAGACACAACCTAACCTTGTCCCTCTGACCAGAAGGGAGAAAAAAAAAAAAAAGAGCTCAACGACTTAGCGCTTCNAGTTCGAGAAGAAGAAGAAGCATAAGCAGGTACAGTTGCAGCTCAGGAGCACCACCGTTGTTTGTGATATTCGTATTCTGCATTTCTCGATGGGCAACCGCATCAGCCGCAAACCCTCTTCCGAATCCCAAACCCAACATAAATCGGAGTCCACACCCTCCGCCTCCAGTGCCATCTCCGTCTTCCCTCCCCATCGGAAGCCCAAACCGGCCNCCATCCCCGCGGCCCGCTCAGTGGGCCGAGTCCTGGGCCGGCCCATGGAGGACGTCCGGTCCACATACATCTTCGGCCGTGAACTTGGCCGTGGCCAGTTCGGAGTAACATACCTAGTGACCCACAAGGTGACAAAGGAGCAGTTAGCCTGCAAATCCATCGCCACNCGGAAGCTGATCCACCGCGATGACTTGGATGATATCCGGCGTGAGGTGCAGATCATGCACCACCTCACCGGCCACCGCAACATCGTGGAGCTCCGTGGTGCCTACGAGGACCGACACTCCGTTAACCTCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACAGGATCATTTCCAAGGGCCACTACTCCGAGCGCGCCGCCGCCAACCTCTGCCGCCAGATCGTCACCGTTGTCCACAATTGTCATTCCATGGGAGTTATGCATAGGGATTTGAAGCCCGAGAACTTCTTGTTCCTCAGCAACGACGAGAATTCGCCTCTTAAGGCCACCGATTTCGGTCTCTCCGTGTTTTTCAAGCCCGGAGATGTATTTAAGGATCTTGTTGGGAGTGCCTATTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGACCCGAAGCTGATATTTGGAGTGCTGGGGTTATTTTGTATATTCTCCTCTCTGGTGTTCCTCCCTTCTGGGCAGAAAATGAACAGGGTATCTTTGATGCTATTCTCCGTGGACGTATTGATTTTGCATCGGATCCTTGGCCTTCCATATCCAGTAGTGCTAAAGATCTAATCAAGAAGATGTTGAGAGCTGACACTAAAGAACGACTTTCAGCTGTTGAAGTCCTTAATCATCCTTGGATGAAGGAAGATGGAGCATCTGATAAGCCTCTTGATATTGCTGTTTTAAGCAGAATGAAACAATTCAGNGCAATGAACAAGTTAAAGAAAGTGGCTTTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAAATTATTGGCTTGAAGGAAATGTTCAAATCCATAGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTAGGTACTAAGATTTCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGCTGATGTAGACGGAAATGGAAGCATTGATTATATTGAATTTATAACAGCTACCATGCACATGAATAGAATGGAAAGAGAGGACCACCTATACAAAGCTTTTGAATATTTTGACAAGGACAAAAGCGGGTACATCACAAAGGAAGAGTTGGAATCTGCCCTTAAAAAGTATAATATGGGTGATGAGAAAACAATAAAGGAGATCATTGCAGAAGTTGATACAGACAATGATGGAAGAATCAACTATGATGAGTTTGTAGACATGATGAGAAAAGGCAACCCAGACTTGGTAACCAACAGACGTCGCAAATGATTAAGTTTATCATAAATTGCCTGTTTTACTCGGTTCGGAGGTAGAAAGGCTATGGCAGGTTTCAGTAATATGTACAGATTTGCATTTACCACTCTTTACTCACTTCTTGTTTCAGAACATCTCTTGCTTTAACAGATTGTCTTTGCTTCGGCTTCTTAATTGCCTGCTATTTGCTAGCAGAGATAGGCACTTGCATGGTAATTTACTGGTCCCGTGAGACATTTTTCTCTCTACTGGTTCACTAGACATGATGATGAATATGTACAAAATTTAGAAACAGATGATATCCCCCCTTTCTCCACTTTAAGGCAAAAAGTAAGGGAGAGATTTCGTTCTAGCTGGTGAGGGGCTTATGTACCTTGTAATAACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	95483	99940	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13412	CPK	EC:2.7.11.1	Plant-pathogen interaction	map04626
			Toxoplasmosis	map05145

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005509 calcium ion binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011198.1	PF00069.20	Pkinase	65	322	9.00E-68
Glyur000143s00011198.1	PF13499.1	EF-hand_7	369	428	2.40E-13
Glyur000143s00011198.1	PF13499.1	EF-hand_7	441	500	3.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	43.345
SRR1783600	control	43.513
SRR1783602	moderate drought stress	50.258
SRR1811619	moderate drought stress	50.257

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	31.466
DRR006520	Root Summer glycyrrhizin high producing strain	31.144
DRR006521	Root Winter glycyrrhizin high producing strain	24.523
DRR006522	Root Winter glycyrrhizin high producing strain	23.619
DRR006523	Root Summer glycyrrhizin low producing strain	42.316
DRR006524	Root Summer glycyrrhizin low producing strain	41.777
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.698
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.645

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.600
SRR2868004	Drought Stress (root)	80.919
SRR2967015	Control (root)	72.061

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.986
SRR9715740	Leaf	26.654
SRR9715741	Leaf	44.163
SRR9715739	Root	7.654
SRR9715742	Root	31.997
SRR9715743	Root	28.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.693
SRR8749028	MeJA induced 9h	45.090
SRR8749029	MeJA induced 9h	35.422
SRR8749030	Uninduced	50.795
SRR8749031	Uninduced	48.102
SRR8749032	Uninduced	27.647

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	57.133
SRR8400027	Control - Root	60.644