Gene detail

Gene detail information of Glyur000143s00011197

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64150.1	4.00E-75	Uncharacterized protein family (UPF0016)
NR	XP_004511539.1	7.29E-157	PREDICTED: GDT1-like protein 1, chloroplastic-like [Cicer arietinum]
COG	YP_007100697.1	4.00E-38	hypothetical protein Chro_5975 [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|Q94AX5\|GDT11_ARATH	1.00E-92	GDT1-like protein 1, chloroplastic (Precursor)
trEMBL	tr\|G7KAQ7\|G7KAQ7_MEDTR	2.00E-135	GDT1-like protein {ECO:0000313\|EMBL:AES94003.2}

Sequence

Transcript Sequence

>Glyur000143s00011197.1
AGAGTTGGTTGGTGAATGGTGGCACGGGGCTTATCCAAGGAACTGGGAAAAGGGAGAGAGAATCATTGAGGAGCAGAGCAAAGCAATAACGCAGAGAGGGAAGCTTGGTACGCCTACGCCCCACATATAGAAATTAGAAATGCAATCACACTCACCCAGTCAAAGCTTGCTACGCCTACGTCCACATTCACTCCCTCCGTTTCCGAAACCATTCGCATCATCATCATCACCACCACCACCACCTTCTTCTTCTTTCACTTTCCGCTCTAAGACTAGTCTCCTCACTCTGCAATCTTCAACTTTCGCCAGGTCACCTATCTCCTCTTGCATTTTCCGAAATGAAATCAAATTGCGCATGCTCCTTTCCGAGCCTCCTCGGGGCACANGGGGATTCACTCGTGCTTACAAGCATTGCAGCGCTGCATCAAACAATCGCCACCATTCCGTTGCTGAAAACTCCAATTGGGAACGTCACTTAGCCCCGCCGATTGTTTCTTCTGCTGGTGATAAGGGATCCATTGGACTTGTCAAGTTTATGCTGTTCTTTGCGTTCCTTACGCTTCAAGACTCTTATCCAGCTGCTGCTGCTGCTTCTGATTTTGCCACTGGTTTGAATTCAGTTCCCATATTTGGGGATATCGGTGACTTAAGCACAGGTTTTGCTTCAGCTTTTCTGCTAATATTTTTCTCTGAACTGGGAGACAAGACCTTTTTCATTGCAGCACTGTTAGCAGCTAGGAATTCAGCTGGTGTTGTTTTCCTTGGGACATTTGGCGCACTTGCGGCAATGACTCTCATATCTGTCGCTCTTGGACGAACTTTTCATTATGTCGATGAAATCTTGCCGTTCAGTAATGGCCAAAAATCAGATGATGAGCAGAAGGAGGCAGAGCTAGCAGTTTCAGATTTTTCTGGAAACGGTGCTGGGATACTAGCTGCTGCTGGCACAGTTGTTAGCACTTTTCTTGTAGTTTTTGTTGCTGAATGGGGTGATAAATCATTTTTCTCTACAATTGCCCTTGCAGCAGCTTCTTCACCTCTTGGAGTCATAGCTGGATCACTGGCCGGTCATGGTGTTGCAACTTTGCTAGCTGTACTTGGGGGCTCTTTACTGGGGACATTTTTGTCAGAGAAGGTTATTGCCTACATCGGGGGTGTTCTCTTTCTCGTCTTTGCTGCAGTAACCTTATTTGAAATTGTACAATAGAGGTTAAAAGAAATGCAATATCAGCTCAGTACAAAGGCATCAAGAACGCATCGATTTCCAGATGCTCCAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	89627	94232	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011197.1	PF01169.14	UPF0016	174	228	5.80E-17
Glyur000143s00011197.1	PF01169.14	UPF0016	272	346	3.00E-21
Glyur000143s00011197.2	PF01169.14	UPF0016	174	228	1.50E-17
Glyur000143s00011197.2	PF01169.14	UPF0016	272	346	3.00E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.765
SRR1783600	control	0.944
SRR1783602	moderate drought stress	1.545
SRR1811619	moderate drought stress	1.582

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.093
DRR006520	Root Summer glycyrrhizin high producing strain	1.126
DRR006521	Root Winter glycyrrhizin high producing strain	2.257
DRR006522	Root Winter glycyrrhizin high producing strain	2.138
DRR006523	Root Summer glycyrrhizin low producing strain	0.432
DRR006524	Root Summer glycyrrhizin low producing strain	0.305
DRR006525	Leaf Summer glycyrrhizin high producing strain	53.564
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.255

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.680
SRR2868004	Drought Stress (root)	3.930
SRR2967015	Control (root)	4.471

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.887
SRR9715740	Leaf	30.865
SRR9715741	Leaf	17.263
SRR9715739	Root	0.567
SRR9715742	Root	0.449
SRR9715743	Root	0.642

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.049
SRR8749028	MeJA induced 9h	0.044
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.017
SRR8749032	Uninduced	0.029

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.578
SRR8400027	Control - Root	4.087