Gene detail

Gene detail information of Glyur000143s00011196

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G41610.1	0	cation/H+ exchanger 18
NR	XP_003611041.1	0	Na+/H+ antiporter-like protein [Medicago truncatula]
COG	YP_003950769.1	7.00E-100	cation transporter/universal stress family protein [Stigmatella aurantiaca DW4/3-1]
Swissprot	tr\|Q9FFR9\|CHX18_ARATH	0	Cation/H(+) antiporter 18
trEMBL	tr\|G7KAQ3\|G7KAQ3_MEDTR	0	Cation/H+ exchanger 3 {ECO:0000313\|EMBL:AES93999.1}

Sequence

Transcript Sequence

>Glyur000143s00011196.1
CTGTTGAAATGACTTCCAATACCACATCTGGAAATGTTTGCCCGCCGCCAATGAAAACCACATCAAATGGNGCATTCCAGGGAGATAACCCTCTCGATTTTGCACTTCCCTTGGCTATTTTGCAGATATGCCTTGTTCTTGTGGTCACAAGGGGACTGGCGTATCTTCTAAGACCTTTGAGGCAACCACGAGTTATTGCAGAGATTATTGGAGGAATAATACTCGGGCCATCAGTTCTTGGACGGAATAGAAGCTATCTGAATGCAGTTTTCCCACCTAAGAGTCTTCCAGTATTAGATACTCTAGCAAACCTTGGCCTTATATTCTTTCTATTCCTAGCAGGCCTAGAGTTAGATCCTAAATCTCTGCGGCAAACTGGAGGTCGAGTCCTTGGAATTGCTATGGCTGGAATAAGCTTGCCCTTCGCACTAGGAATTGGTTCATCGTTTGTTCTGCTAAAAACAATTGCCAAGGGTGTAGATACTACCGCATTTCTTGTATNCATGGGTGTTGCTCTGTCTATAACNGCATTTCCTGTATTAGCCCGTATTCTGGCCGAGTTAAAACTTCTAACCACCAGTGTTGGCAGAATGGCTATGTCAGCTGCAGCAGTCAATGATGTAGCTGCCTGGATTCTGCTTGCCCTGGCTGTTGCCTTATCAGGCAATAACCANTCTCCACTTGTGTCATTGTGGGTCTTCTTAACTGGGTGTGGTTTTGTCATTTGTTCANTCCTCATTGTTCTTCCAATTTTCAAATGGATGTCCCAACGATGCCAAGAAGGCGAACCAGTTGAAGAGTTATACATATGTGCTACATTAGCTGCTGTTTTGGCCGCTGGGTTTGTCACGGATGCTATTGGAATCCATGCCATGTTTGGAGCATTTGTTTTTGGAATTTTGGTCCCAAAAGATGGACCATTTGCCAGTGCTCTTGTGGAAAAAGTAGAGGATCTTGTCTCTGGTCTATTGCTCCCACTCTATTTCGTGTCAAGTGGACTGAAGACTGATATAGCCACCATTCAGGGGCTGCAATCATGGGGTCTTCTGGTTTTNGTTATATTCACTGCTTGTTTTGGGAAGATTGTTGGGACTATCTTAGTGTCTCTTTTGTGTAAAGTACCTTTCAATGAGGCTGTAGTGNTGGGGTTCTTGATGAATAGTAAAGGCTTGGTTGAACTAATTGTTCTCAACATCGGTAAAGATAGAAAGGTTTTGAATGATCAGACCTTTGCCATTATGGTTATGATGGCTCTCTTTACTACCTTCATCACCACTCCTCTCGTGATTGCCGTGTATAAGCCNGCAAGGAACGCAAGAGCAGCTGATTACAAACACAGAAAAATTGAAAGGAAAAATGCAAACAGCCAACTGAGGATTCTTGCCTGCTTCCACGGTGCAAGGAATATTCCATCGTTGATAAATTTGATCGAGGCCTCAAGAGGAATCCAGAAGCGCGATGCACTTTGTGTGTATGCAATGCACCTTAAAGAATTTTCCGAGAGGTCCTCAACTATACTAATGGTACAAAAGGCAAGGAAAAACGGGTTGCCATTTTGGAATAAAGGTCACCGTGCAGATTCCAACCATGTCATTGTGGCATTTGAGGCTTATCAGCAACTAAGCCAAGTCTCTGTCAGGCCAATGATAGCAATCTCATCAATGGCCAACATTCATGAAGACATTTGTGCAACTGCTGAGAGAAAGAGAGCCGCAGTCATAATTCTTCCATTTCANAAGCAACAAAGATTGGACGGTTCACTAGAGATCACAAGAAACGATTTTCGATTTGTAAACAAAAGGGTACTTGAGCATGCACCNTGCTCAGTTGGAATCTTTGTTGATCGTGGGCTCGGTGGCACATGCCACGTGTCAGCAAGCAATGTTTCCTATTGCGTTACCATGCTTTTCTTTGGTGGGGGTGATGACCGTGAAGCCCTTGCTTATGGAGCTCGTATGGCTGAGCACCCTGGCATAAGAGTAGTGGTTATTCGCTTTGTTGTAGAACCTGGAGTTGTAGGAGAGGTTACGAGACTTGAGGTGGGAGAATCGTCTAGCACTAAATCNATCTCAGAGGATGAGGAGTTCCTTGCGGAGTTTAAGGTGGAAACAGCTAATGATGACTCAGTCATCTATGAAGAGAAAATGGTAAAAGATGCTGCAGAAACAGTTGCCACTATCCGTGNGTTAAGTTGCTGCAATCTGTTTCTTGTGGGTCTGAGGCCAGCTGGTGAAGTGGCTATTGCTCTGAAGAGAAGCGAGTGCCCGGAACTGGGACCTGTTGGGGGTTTGTTGGCATCCCAAGATTGTCCCACAACAGCATCGGTTTTGGTGATGCAACAGTATCACGCTGGGGTGCCCATGAATTTTATGTCAGAAACGGAGGAACATTCAGCCGATGGAGACGCAGGATCTGCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	85547	88766	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006812 cation transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015299 solute:proton antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011196.1	PF00999.16	Na_H_Exchanger	41	425	9.00E-72

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.274
SRR1783600	control	2.224
SRR1783602	moderate drought stress	2.794
SRR1811619	moderate drought stress	2.823

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.194
DRR006520	Root Summer glycyrrhizin high producing strain	1.092
DRR006521	Root Winter glycyrrhizin high producing strain	8.133
DRR006522	Root Winter glycyrrhizin high producing strain	8.056
DRR006523	Root Summer glycyrrhizin low producing strain	2.187
DRR006524	Root Summer glycyrrhizin low producing strain	2.058
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.359
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.342

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.666
SRR2868004	Drought Stress (root)	12.116
SRR2967015	Control (root)	14.059

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.789
SRR9715740	Leaf	2.897
SRR9715741	Leaf	2.102
SRR9715739	Root	1.391
SRR9715742	Root	2.925
SRR9715743	Root	3.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.081
SRR8749028	MeJA induced 9h	9.449
SRR8749029	MeJA induced 9h	6.582
SRR8749030	Uninduced	14.821
SRR8749031	Uninduced	12.156
SRR8749032	Uninduced	11.809

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.397
SRR8400027	Control - Root	4.232