Gene detail

Gene detail information of Glyur000143s00011185

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23740.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_003611028.1	0	Probably inactive receptor-like protein kinase [Medicago truncatula]
COG	YP_004163701.1	1.00E-18	hypothetical protein [Cellulophaga algicola DSM 14237]
Swissprot	tr\|Q9SUQ3\|Y4374_ARATH	0	Probable inactive receptor kinase At4g23740 (Precursor)
trEMBL	tr\|G7KAP0\|G7KAP0_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES93986.1}

Sequence

Transcript Sequence

>Glyur000143s00011185.1
CGGTAACAATAGGTAAAGTGCCACTCCCTCTCTCACTCACATCACATCACATGCCACTGCCACTACTACAGCACCGTTCGTTCGGGTTGGGAACGGTTAAAAACTCGTGTTCACCTCCAATCCAATTACCCAATGAAATGCAATGCCCGGCCACTCGCTCTTCGATTCTATTTATCACATTCATCACTCCCTTCCCAATCTTGTCTTGTTATTAGAAAAGAAAATTCATCCGCAAACTGCAATCTACATTTCCAACACCATCACTAACTAGGTAGTACCATTCACTGTTTACTTTGGCATTGGATGCTACTTTTCACCGATCGCCATGATTGGATTCCTCACGAATCATAACCCCCCCGTGTATACAGTAGACTAGAAATGCAGTGTGAATGAAGTGAACTAGCAGAAACAGAGAGCGTGAAAATGGGATATTATTTTCTTCCTCGCATTTTGTATTCCATTTACGTGGTGGGTTTGTTGTTGGTGTGGCAAGGAAATGCAGAAGCGGTTGTTGAAGACAAGCGAGCCCTGTTAGAGTTTGTGAGAAAGTTCCCTCCTTCACGGCCTCTGAATTGGAATGAGGGTTCTTCCCCGTGTACCAGTTGGACTGGTGTGACTTGTAACGAAGACAAGTCACGAGTTATAGCCATTCGATTACCAGGTGTTGGATTTCATGGCACCATTCCTCCCAATACACTCAGCCTCATCACGGGGTTGCAAACACTTAGCCTCAGATCCAACTTTATCAGTGGCCATTTCCCTTCTGATCTTCTCAATCTCAAGAACCTTTCTTTCCTCTATCTCCAATTCAACAATCTCACGGGTCCTTTGCCGGATTTCTCTGCTTGGAAGAACCTCTCTGTTGTCAATTTGTCCAATAACCGTTTCAGTGGCAGCATTCCTCTCTCTTTTTCCAATTTGTCTGAGCTTGCTGGTTTGAATCTCGCAAACAACTCGCTCTCTGGTGAAATCCCCGATCTCGGGCTTCCCCGGTTGCAGCAACTGAATTTGTCTAACAACAATCTGCAAGGGGTTGTTCCGGTTTCTCTCAAGAGGTTTCCTAAGTCAGCATTTGTTGGGAACAACATTTCCCTTGGAAGCTCTCTTCCCTTTTACCCTGTAACTCTGCCATGTTCCAAACAGTGTTCTAAATCTGGTGAGAAACATGGAGGGCTTCGCCGAACCGCAGTGTTGGGAATTATTGCTGCTGGTGCTGTTCTAGNCCTTGCAGCATTCCTTGTTTTTATCTTTTTGTGCTGCTTGAGAAGGAAGGATGGAGATGTCTTTGCTGGAAAGTTGGAGAAGGGAGAAATGTCACCTGAGAAAGTGGTCTCGAGAAACCTGGATGCAAATAATAAACTTGTTTTCTTCGAGGGGTGTAATTATGCCTTTGACTTGGAGGATTTGTTAAGGGCTTCTGCTGAGGTACTGGGTAAGGGAACATTTGGTGCTGCATACAAGGCTGTGCTAGAGGATGCAACCACAGTTGTTGTGAAGAGGCTAAAGGAGGTAGCTGTTGGAAAGAAGGATTTTGAGCAACTCATGGATGTTGTTGGGAGTCTTAAACATGAGAATGTGGTTGAGCTAAAGGCATATTACTATTCCAAAGATGAGAAACTGATGGTATATGATTACTACAGTCAGGGTAGCGTCTCTGCTTTGTTGCATGGTAAAAGAGGAGAGGATAGGCTGGCTTTAGATTGGGATACTCGGATCAAAATAGCCTTAGGAGGTGCACGAGGTCTTGCNCGTATCCATTCCGAGAACGGTGGGAAGCTTGTCCATGGCAATGTCAGATCCTCAAATATCTTTCTGAATACTAAACAGCATGGTTGTGTATCCGATCTTGGTCTGGCAACCATAATGAGCTCGGTNGCCCAACCCATCTCGCGAGCCGCGGGTTACCGAGCACCCGAAGTTACAGACACCAGGAAAGCAACACAGGCTTCAGATGTTTACAGCTTTGGTGTGGTGTTACTAGAGCTTNTAACTGGGAAATCCCCTATCCACACAACTGGAGGAGATGAGATTGTCCACCTTGTGAGATGGGTTCATTCAGTTGTTAGAGAGGAGTGGACAGCTGAAGTATTTGACTTGGAGCTGATGAGATGTCCCAATATAGAAGAAGAGATGGTGGAGATGTTGCAGATAGCCATGTCATGTGTGACAAGGNNGCCTGATCAGAGACCTAAGATGTTAGAAATAGTAAAAATGATTGAAAATGTCAGGCACATTGATATAGAGAATCAGCCNTCATCTGAGAACCAAGCTGAAAGTGCAACACAGACCTCTCTAACGACCGAGAATAAACTACCTCTACGTGACAATGACGACTCCCTTTCTATTTCCTCTAGTCCTCCCCCTACCCAAAAAGGAGGTGAATAATAGAAAGCTTCTGCTGCCTTCATTTGATTTGAGTGTATCAGAAAAAATGTTTTGCTCCAAATTCTGAACAAGAGAATGTTTCTTTTTTTCTTTCCCTCTATATTTAATATGGTCGCTGAACGGGGGTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00143	22335	25995	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000143s00011185.1	PF08263.7	LRRNT_2	31	67	3.20E-08
Glyur000143s00011185.1	PF00560.28	LRR_1	98	119	0.98
Glyur000143s00011185.1	PF00560.28	LRR_1	121	140	1
Glyur000143s00011185.1	PF13855.1	LRR_8	144	201	2.20E-07
Glyur000143s00011185.1	PF00069.20	Pkinase	334	596	5.40E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.203
SRR1783600	control	20.443
SRR1783602	moderate drought stress	10.572
SRR1811619	moderate drought stress	10.540

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.270
DRR006520	Root Summer glycyrrhizin high producing strain	22.701
DRR006521	Root Winter glycyrrhizin high producing strain	0.410
DRR006522	Root Winter glycyrrhizin high producing strain	0.433
DRR006523	Root Summer glycyrrhizin low producing strain	10.575
DRR006524	Root Summer glycyrrhizin low producing strain	10.645
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.710
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.669

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.098
SRR2868004	Drought Stress (root)	11.797
SRR2967015	Control (root)	15.612

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.048
SRR9715740	Leaf	0.296
SRR9715741	Leaf	0.893
SRR9715739	Root	15.947
SRR9715742	Root	13.193
SRR9715743	Root	12.896

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.131
SRR8749028	MeJA induced 9h	0.701
SRR8749029	MeJA induced 9h	0.719
SRR8749030	Uninduced	0.020
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.106

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	26.946
SRR8400027	Control - Root	31.657