Gene detail information of Glyur000142s00009131.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G08630.4 | 4.00E-67 | threonine aldolase 1 |
| NR | ACJ84635.1 | 5.95E-93 | unknown [Medicago truncatula] |
| COG | YP_005443407.1 | 2.00E-50 | putative threonine aldolase [Caldilinea aerophila DSM 14535 = NBRC 104270] |
| Swissprot | tr|Q8RXU4|THA1_ARATH | 4.00E-82 | Probable low-specificity L-threonine aldolase 1 |
| trEMBL | tr|B7FIQ6|B7FIQ6_MEDTR | 2.00E-93 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ84635.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00142 | 295190 | 295639 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01620 | ltaE | EC:4.1.2.48 | Biosynthesis of amino acids | map01230 |
| Glycine, serine and threonine metabolism | map00260 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000142s00009131.1 | PF01212.16 | Beta_elim_lyase | 8 | 148 | 2.30E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.616 |
| SRR1783600 | control | 0.647 |
| SRR1783602 | moderate drought stress | 0.890 |
| SRR1811619 | moderate drought stress | 0.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.495 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.395 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.202 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.532 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.799 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.090 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.203 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.032 |
| SRR2868004 | Drought Stress (root) | 5.701 |
| SRR2967015 | Control (root) | 7.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.862 |
| SRR9715740 | Leaf | 4.798 |
| SRR9715741 | Leaf | 22.765 |
| SRR9715739 | Root | 0.677 |
| SRR9715742 | Root | 1.725 |
| SRR9715743 | Root | 2.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.594 |
| SRR8749028 | MeJA induced 9h | 8.544 |
| SRR8749029 | MeJA induced 9h | 3.090 |
| SRR8749030 | Uninduced | 8.006 |
| SRR8749031 | Uninduced | 9.770 |
| SRR8749032 | Uninduced | 5.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.233 |
| SRR8400027 | Control - Root | 3.977 |