Gene detail information of Glyur000142s00009127 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28490.1 | 8.00E-53 | Protein of unknown function (DUF640) |
| NR | XP_002267312.1 | 6.71E-88 | PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera] |
| Swissprot | tr|Q9LMK2|LSH6_ARATH | 7.00E-75 | Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 |
| trEMBL | tr|F6H618|F6H618_VITVI | 3.00E-88 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47657.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00142 | 269834 | 270502 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000142s00009127.1 | PF04852.7 | DUF640 | 54 | 170 | 1.40E-60 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 142.676 |
| SRR1783600 | control | 142.402 |
| SRR1783602 | moderate drought stress | 106.888 |
| SRR1811619 | moderate drought stress | 107.383 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 125.894 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 119.679 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 21.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.076 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 91.124 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 96.062 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.550 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.254 |
| SRR2868004 | Drought Stress (root) | 0.132 |
| SRR2967015 | Control (root) | 0.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.203 |
| SRR9715740 | Leaf | 1.535 |
| SRR9715741 | Leaf | 0.431 |
| SRR9715739 | Root | 125.192 |
| SRR9715742 | Root | 92.753 |
| SRR9715743 | Root | 84.325 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.513 |
| SRR8749028 | MeJA induced 9h | 1.758 |
| SRR8749029 | MeJA induced 9h | 8.795 |
| SRR8749030 | Uninduced | 0.925 |
| SRR8749031 | Uninduced | 0.768 |
| SRR8749032 | Uninduced | 0.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.651 |
| SRR8400027 | Control - Root | 34.597 |