Gene detail information of Glyur000142s00009120 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G56070.2 | 1.00E-73 | rotamase cyclophilin 2 |
| NR | AER12108.1 | 3.34E-110 | CYP [Gossypium hirsutum] |
| COG | YP_005366669.1 | 9.00E-87 | peptidyl-prolyl cis-trans isomerase [Corallococcus coralloides DSM 2259] |
| Swissprot | tr|Q38867|CP19C_ARATH | 5.00E-104 | Peptidyl-prolyl cis-trans isomerase CYP19-3 |
| trEMBL | tr|G8FRB6|G8FRB6_GOSHI | 1.00E-110 | Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00142 | 218363 | 218887 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000142s00009120.1 | PF00160.16 | Pro_isomerase | 12 | 169 | 2.10E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.693 |
| SRR1783600 | control | 0.628 |
| SRR1783602 | moderate drought stress | 2.431 |
| SRR1811619 | moderate drought stress | 2.522 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.747 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.114 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.207 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.002 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.108 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.992 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 43.261 |
| SRR2868004 | Drought Stress (root) | 20.291 |
| SRR2967015 | Control (root) | 13.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.759 |
| SRR9715740 | Leaf | 2.447 |
| SRR9715741 | Leaf | 2.097 |
| SRR9715739 | Root | 0.307 |
| SRR9715742 | Root | 1.655 |
| SRR9715743 | Root | 2.267 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.995 |
| SRR8749028 | MeJA induced 9h | 18.676 |
| SRR8749029 | MeJA induced 9h | 27.319 |
| SRR8749030 | Uninduced | 0.121 |
| SRR8749031 | Uninduced | 0.173 |
| SRR8749032 | Uninduced | 0.552 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.626 |
| SRR8400027 | Control - Root | 2.691 |