Gene detail information of Glyur000142s00009117 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14465.1 | 2.00E-50 | AT-hook motif nuclear-localized protein 20 |
| NR | KHN01050.1 | 1.06E-90 | Putative DNA-binding protein ESCAROLA [Glycine soja] |
| Swissprot | tr|Q9S7C9|ESCA_ARATH | 7.00E-44 | Putative DNA-binding protein ESCAROLA |
| trEMBL | tr|I1NI15|I1NI15_SOYBN | 4.00E-91 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G34430.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00142 | 212653 | 213474 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000142s00009117.1 | PF03479.10 | DUF296 | 91 | 204 | 5.10E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.693 |
| SRR1783600 | control | 6.642 |
| SRR1783602 | moderate drought stress | 13.021 |
| SRR1811619 | moderate drought stress | 13.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.685 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.496 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.320 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.132 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.854 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.125 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.730 |
| SRR2868004 | Drought Stress (root) | 2.610 |
| SRR2967015 | Control (root) | 2.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.392 |
| SRR9715740 | Leaf | 0.355 |
| SRR9715741 | Leaf | 0.318 |
| SRR9715739 | Root | 8.368 |
| SRR9715742 | Root | 6.930 |
| SRR9715743 | Root | 7.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.866 |
| SRR8749028 | MeJA induced 9h | 4.808 |
| SRR8749029 | MeJA induced 9h | 2.171 |
| SRR8749030 | Uninduced | 4.411 |
| SRR8749031 | Uninduced | 0.380 |
| SRR8749032 | Uninduced | 0.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.812 |
| SRR8400027 | Control - Root | 1.371 |