Gene detail

Gene detail information of Glyur000142s00009116.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04580.2	0	Signal transduction histidine kinase, hybrid-type, ethylene sensor
NR	XP_003626476.1	0	Ethylene receptor [Medicago truncatula]
COG	YP_007144470.1	2.00E-49	multi-sensor hybrid histidine kinase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q9ZTP3\|EIN4_ARATH	0	Protein EIN4
trEMBL	tr\|G7L2X0\|G7L2X0_MEDTR	0	Ethylene receptor {ECO:0000313\|EMBL:AES82694.1}

Sequence

Transcript Sequence

>Glyur000142s00009116.1
CTTCTCTCTCTCTCTCTCTCTCTTCAAACTTCAAACAGTTTCTTCTTCCTTTCTCTCTCCGTCCATCGCCTACCTTCTACCAAATTGATTTTCCTCTTCTTCTTTTATTATTATCATTATTCTTTCATCGATTCGTGATTNGGCTCTGGTATTGTAATTCACCGAAAAGCTTCAAATCACCGAATGCCGTGACTGCGAAGGAAGAAGAACAAGACCATTGAAATTCGAAACACGGTTTATGCTGCATCACTCTCTGCCTCTTTGATTTCTTCTGTTCTTCTCAGTTTTTTGTTTTTCTAATTGCTACTACCCGTGAGCTTCTCCTCTTGTTCTTCATGTATTGGATTACTATAACCATAAGTTAGTTTGATTATTTATTTAAATTTGAATTTTGATTAGAATTTAGAAAGAACATGGTGTTGTAGTTAAGGTAGGTGTGACTGAAGTTAGTTTAGATCTAGAGTGTTCACCTGTGGCTACGGAAGATGATACGTCAGCATCTATGGTGTTAGGTTGAGGTTTGGGGATTGATAAGAATGATGGCTTTGACGGTTGGTTTGGAAAAACACCAATAACTTTGTTGTTGTTGTTGCCATGATGGAAAGAGGGCTGTTGTTGTTGCTGCTGTTATTAGTTTCTTGTCTCGTGCTCTCTGTTTCTGGCATCGACGGGGAATTTGTACATTGCAACTGTGATGATGAGGAAGGGCTTTGGAGCATACAGAGCATTCTGGTTTCCCAAAAAGTCAGTGACTTTTTCATTGCTATTGCTTATTTCTCCATACCCCTTGAGCTCCTTTACTTCGTTAGCTACTCCAACGTCCCATTCAAATTGGTCTTCCTTCAGTTCATTGCCTTCATAGTCCTCTGCGGTTTGACCCATTTGCTCAATGCCTACACTTACTACGGCCCTCACTCCTTCCAGCTTTTCCTCTCTCTCACTNTTGCTAAGTTCCTCACCGCTCTTGTTTCCTGTGCCACTGCAATCACCTTTCCCACCCTGATTCCTCTTCTTCTGAAAATCAAGGTGAGGGAGCTCTTCTTGAGGCAGAATGTGTTGGAGTTGGGGCAAGAGGTTGGGATGATGAAGAAACAAAAGGAAGCGAGTTGGCATGTTAGGATGCTGACGCGTGAGATCAGGAAGTCTCTGGATAAGCACACCATCTTGTATACCACCCTTGTTGAGCTCTCCAAGGCCTTGGAGCTGCACAATTGTGCGGTNTGGATGCCCGATGAGGACAGGCGGGTGATGCATTTGACTCATGAGTTGAAACCGAACCCGGCGAAGAGTTTTCATAGTTCTATTCCTGTGAACGATCCGGATGTGTTGGAGATAAGGAAGAGCAAGGGTGTGTGGATTTTGAGGCCTGATTCTGCACTGGGAGCTGCAAGTAGTGGTGGATCTGGGGATTCGGGTGCTGTGGCAGCCATTCGCATGCCGCTACTCCATGTTTCGAATTTCAAAGGAGGGACACCNCAGTTGGTTGATACNTCTTATNCTATACTGGTTTTGGTTCTTCCAAATTCAAACTCCAAGGCTTGGACCTCCCATGAGATGGAGATAGTGGAAGTAGTCGCTGACCAGGTGGCTGTGGCCTTGTCTCATGCGTCCGTTCTTGAAGAGTCTCAGCTAATGAGCCAGAAACTTGCAGAGCAAAACCGGGCATTGCAACAGGCTCAGAAGAATGCAATGATGGCCAGCCAGGCAAGGAGCTCATTTGAGAAAGTGATGAGCCATGGAATGCGGAGACCTATGCATTCAATCCTGGGCTTGCTTTCAATTTTTCAAGAGGATAATATAAGATCTGAGCAGAAGATTGTTATTGACACAATGTTGAAAGTTAGCAATGCGCTCTCACGGTTGATTAACGATGTAATGGACATTTCNGCAAATGACAAAGGAAGCTTCCGGTTAGAGATGAAACCTTTCCATCTACATTCCATGATGAGGGAAGCTTCATGCATTGCCAAGTGTTTGTGTATATATAAAGGCTTTGATCTTGAAATTGATGTCAACAGGTCTTTGCCTGATATGGTAATNGGTGATGAGGCAAGGTCTTTTCAAGTAATTTTGCATATGATTGGCTATTTATTGAACTTATATGATAGAGGGACTCTCATTTTTCGAGTTTCTCTTGAAAGNGATACCGGGGATAAGGATGATAAAAGTTTTGGAATATGGAGATCGAGCAAGCAAAATGATTATGTATATATAAAATTTAATTTCCAGATANCTGGTACTAGTTCCCATTCAGATGAATCAATTTTAACTAGAAGTTATGCTAGTAGGAGGCANGGCAGCAATGAACCTAAGGAGAGCCTGAGCTTCAGCATGTGCAAAACGTTGGTGCAGATGATGCAAGGTAATATCTGGATATCACAAAACTCTCTGGGTGTGGCACAAGGGATGACACTACTTCTCAAGTTTCAACTAGGTTCATTGCATGGAAGATTTGTTCTTGCTCAGAATNATTTTTCAAACTCGCAGTTTAGAGGGATTAAGGTTGTTTTAGCCGATGACGATGATGTAAACCGGACTGTAACGAAGAAGCTGCTNGAGAAGCTGGGTTGTCAAGTAACCGCCGTTTCATCAGGGTTTGAATGTTTGGGTGCCGTAACTGCCTCCGGTAACTCGTTCAGAATCATCCTGTTGGATCTTCACATGCCTGAAATGGATGGTTTTGAAGTTGCGAGGAAGATTCGGAAGTTCCAAAGCCGAAATTGGCCTTTGATTATTGCTCTTACAGCGAGTGCAGAACAACACATAAAGGAGAGATGCCTACAAGCGGGGATGAATGGATTGATTCGAAAACCTATCCTCCTTAATGAGATAGCGGATGAACTTAGAACAGTCCTGCTACGTGCAGGTGAAAAGTTGTGAAAAACAATTTTAAGCGTCTCAAATTTCTTAGGTTCCTCNGAAGTCATTACTTCGACACTCTGACAGAGAACCCTGAAATTCCTAACATACTGAATTATANTAGGTTCATTTTGCTAACCATTTTTCTGTTTGATCTTTTTGCGGTATAATGAATTATGGCTCTCTCCAAGGTATATGGAGCTGGTTGCCACCATCGAACAGAGAAAGATGAAATACAGGATTCTGAAAGTGCATATAATTTCTTGCAGAAAAAAAAAATAATTTCTTGCAGATATTTGTGCAAATGACCTCCTTCTTGTAGAAATAAACTTGTAGAATTATGATCATCGTACGCGTGTGACTCTCTTTTTCTCTTCACAGTATATACTTTAAACTCCTTTTTTAACATGCCATCTTTATAATATACACACAGAGAACACTAGTTTTTATACACATCCAACGTACTACTTAAGTAAATATCATATTCAAAAACTGATGGTGCTGTTCGTCACTGGTGTTTTGTAATGCTGCAGCTGGATTTTTTTTGCTTATACTAGGGACCTGTTGTTGACCTACATTTTTNTTTATAATTGTTAATCTTTTTGATTTGGCTTTTGACAGGAGTGATGAAATTACAGTGCATACACTGACAGAGAAACAAGGTTGTAGAGATTGTGCATTTACTACCCTTTAATCAACTTAATGAATAGTTGGGTTAGTATGATCCATAAGCCTTGACGACGTTAACTTCAAGTTTCTGACNAAGGGAACAGTGGCTTCCAAAGATGCAAATGAAATATTGCTCCCCTGTCTTGTTCAGCATCACAGGAAATTTCACGTATAAGCACCGGTTCCAACAAAGAGATCGCAACCCTATAATATTTATTATTAATAAATCTAATGGTTANAACAACACTGTGGCACCGGTACATTTTCTTTTCAGTTGTGCACCCTAGCCTGGGCCGACCAACTGAACCAATTACCACTTTAGGGTGTTTAATTTATTTTTAATGGTATATGCACAGCTAGTATAGGATTGAACATATTGAACTATCAATTATAACTTTCATTCTTGGGAATTTTGTATATATAGTTTGAGCTGCATGATCGATCAGATTCATCAGGATTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	202999	208192	+

Gene family

Gene family	subfamily
Transcription Factors Family	Orphans

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14509	ETR, ERS	EC:2.7.13.-	MAPK signaling pathway - plant	map04016
			Plant hormone signal transduction	map04075

Gene Ontology

biological_process

GO:0000160 phosphorelay signal transduction system

GO:0007165 signal transduction

GO:0009873 ethylene-activated signaling pathway

cellular_component

GO:0005789 endoplasmic reticulum membrane

GO:0016020 membrane

molecular_function

GO:0000155 phosphorelay sensor kinase activity

GO:0004673 protein histidine kinase activity

GO:0004871 signal transducer activity

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009116.1	PF01590.21	GAF	188	335	1.10E-11
Glyur000142s00009116.1	PF00512.20	HisKA	373	435	3.70E-07
Glyur000142s00009116.1	PF00072.19	Response_reg	637	750	7.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.820
SRR1783600	control	5.903
SRR1783602	moderate drought stress	6.274
SRR1811619	moderate drought stress	6.262

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.200
DRR006520	Root Summer glycyrrhizin high producing strain	7.181
DRR006521	Root Winter glycyrrhizin high producing strain	12.231
DRR006522	Root Winter glycyrrhizin high producing strain	11.864
DRR006523	Root Summer glycyrrhizin low producing strain	8.457
DRR006524	Root Summer glycyrrhizin low producing strain	8.252
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.996
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.034

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.279
SRR2868004	Drought Stress (root)	7.244
SRR2967015	Control (root)	6.625

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.808
SRR9715740	Leaf	3.597
SRR9715741	Leaf	3.759
SRR9715739	Root	4.346
SRR9715742	Root	6.958
SRR9715743	Root	7.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.236
SRR8749028	MeJA induced 9h	8.669
SRR8749029	MeJA induced 9h	5.997
SRR8749030	Uninduced	10.432
SRR8749031	Uninduced	13.064
SRR8749032	Uninduced	6.617

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.365
SRR8400027	Control - Root	10.340