Gene detail

Gene detail information of Glyur000142s00009112

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G71260.1	5.00E-69	WHIRLY 2
NR	XP_007147230.1	1.54E-146	hypothetical protein PHAVU_006G106800g [Phaseolus vulgaris]
Swissprot	tr\|D9J034\|WHY2_SOLTU	1.00E-89	Single-stranded DNA-bindig protein WHY2, mitochondrial (Precursor)
trEMBL	tr\|V7BML4\|V7BML4_PHAVU	6.00E-147	Uncharacterized protein {ECO:0000313\|EMBL:ESW19224.1}

Sequence

Transcript Sequence

>Glyur000142s00009112.1
CAACTAGACAGCAAACATAAACCCCACCCCACCCCACGCGCGCCCCTTTCTTCGCCCCCCACCCCCCAGTGTTCTTCTCAGGCAGCAAGCGAAGCGAGCGAGAGAAAAGAGAAAGCGTTTCCAAAAATGTTCAAGCTATCTCGCGTGCTACCTTCCACTTCTAGGCATCAGCTATTGGAAGCGGTGTCGTCCAGGAATGCACAAATTAGCGACTGTTTACGACATCGGCTTAATTTTACCGATTCAGCGGGCATTTCCACTGCTACAAATAACTATGCTGCTAAAGGCATTTATTTGTACAAAAGGTATACTTCAGACCGTGTTTTTGCTCCTTATTCCGTTTACAAGGGCAAGGCTGCATTCTCATTGAGTCCCTGTCTTCCAACTTTCACNAAGTTGGATTCTGGGGCTGTTGTGGTTGAACGTCGCGGTTCGATCATGATGATTTTCATGCACTCTATTGGGGAGCGCAAATATGACTGGGAGAAGAGACAAAGATTTGCTCTCTCAGCAACTGAAGTTGGTTCTTTGATAACCATGGGCCCCCAAGATTCATGTGAATTCTTTCACGACCCCTCAATGTTATCAAGTAATGCTGGTCAAGTAAGGAAGACCTTATCAATTAAGCCTCATGCGAACAGCAATGGCTACTTCATCAATTTGGCTGTTGTTAACAACCTGTTAAATACCAAAGAATATTTCAATGTTCCTGTCACAAGTGCTGAGTTTGCTGTGATGAAGACAGCTTGCAGTTTTGCATTGCCACACATTATGGGTTGGGACCGTCTGACTAGTCAGCAGTCCAGAGGGACAGTTGGCTTTCAATCGAAGGTGGACTCACAAGTTTTAGACTTGGAATGGGAAAAGTGAATTACTGTTGAGAAATATGAGACGAATCCTTGTTTGTGCTGCAATTCCATTTTGTGTATTATCGATCCAAAGACTAGGATTGCTCGGGGAAGATAACTTGTAAATTGTAATATTTAAGAGATACGAGAAGGATGATTTATCANATGTCAATGCCATTTTGCTGTTAGTCATGTTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	186316	189191	-

Gene family

Gene family	subfamily
Transcription Factors Family	Whirly

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009112.1	PF08536.6	Whirly	113	249	9.60E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.258
SRR1783600	control	24.279
SRR1783602	moderate drought stress	23.563
SRR1811619	moderate drought stress	23.620

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.180
DRR006520	Root Summer glycyrrhizin high producing strain	33.491
DRR006521	Root Winter glycyrrhizin high producing strain	14.443
DRR006522	Root Winter glycyrrhizin high producing strain	14.235
DRR006523	Root Summer glycyrrhizin low producing strain	51.588
DRR006524	Root Summer glycyrrhizin low producing strain	52.997
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.756
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.598

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.723
SRR2868004	Drought Stress (root)	20.227
SRR2967015	Control (root)	20.347

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.472
SRR9715740	Leaf	19.708
SRR9715741	Leaf	16.056
SRR9715739	Root	16.852
SRR9715742	Root	16.282
SRR9715743	Root	13.711

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	30.629
SRR8749028	MeJA induced 9h	13.393
SRR8749029	MeJA induced 9h	18.128
SRR8749030	Uninduced	7.390
SRR8749031	Uninduced	3.948
SRR8749032	Uninduced	4.737

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.416
SRR8400027	Control - Root	30.837