Gene detail

Gene detail information of Glyur000142s00009104

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G33370.1	2.00E-153	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_004494761.1	0	PREDICTED: GDSL esterase/lipase At5g33370-like [Cicer arietinum]
COG	NP_487674.1	1.00E-13	hypothetical protein all3634 [Nostoc sp. PCC 7120]
Swissprot	tr\|Q8LB81\|GDL79_ARATH	0	GDSL esterase/lipase At5g33370 (Precursor)
trEMBL	tr\|G7L2Z4\|G7L2Z4_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:AES82718.2}

Sequence

Transcript Sequence

>Glyur000142s00009104.1
GAGATACCAACAATTGGTTAATAAATTAATAATTTGCAGAGTTGATAGCNGCTCTGTAGTGTGTGTAGCCAATAGCCATCATCATCTAAATTAAATTAAAATCCATCCATGGGGAGAAGTTCCGTGGTTTTAGCGTCTTCTTACATTGTTTTAGGTGTAGTGATAGTGGTGGCAGTGGCCACGGGTGGTTTCAAAGGGGCAGAGGCTCAGTCAGCCCGTGCTTTCTTTGTGTTTGGGGACTCACTCGTGGATAATGGCAACAACAATTACTTGGCAACCACGGCTCGTGCAGACTCTCCTCCATATGGCATTGATTACCCAACTCGCAGACCCACTGGCCGTTTCTCCAATGGCCTCAACATCCCTGACTTTATCAGTCAAGAACTTGGGGCAGAATCCACGTTGCCTTATTTAAGTCCCGAACTCAACGGGGAAAGATTGCTTGTTGGTGCCAATTTTGCCTCTGCTGGCATTGGAATCCTCAATGACACTGGAATCCAATTTGTGAACATAATCAGAATATTCAGACAGTTGGAGTACTTTGAGGAATACAAGCAGAGGGTGAGTGCTCTGATTGGAGCTGAGGGAACTGAGCGCCTAGTGAGTGGAGCATTGGTCCTCATCACCCTCGGAGGCAACGATTTTGTGAACAACTATTACTTGGTGCCTTACTCTGCTAGATCACGCCAGTACGCTTTACCAGATTACGTCAAGTATTTGATCTCTGAGTATAAGAAGATTCTCAGGAGGCTATACGATGTTGGAGCACGTAGGGTGTTGGTGACGGGAACTGGTCCATTGGGGTGTGTTCCGGCGGAATTGGCCCAGAGAGGCAGAAATGGGGAATGCTCGCCTGAGCTACAGCGTGCCGCGTCCTTGTTCAACCCTCAACTTGTGCAGATGATCCAACAACTCAATAGTGAAATTGGTTCTGATGTCTTCATTGGAGCCAACACGCAACAGATGAGCAATGACTTCATCCATAACCCTCAAGCATATGGATTTGTAACATCAAAAGTAGCATGCTGCGGTCAAGGACCTTATAATGGTATCGGATTGTGCACTGTGGTATCCAACTTGTGCCCGAACCGTGACGTTTATGCATTTTGGGATGCTTTCCATCCATCAGAAAGGGCCAACNGCTTGATCGCGCAACAGATCATGTCAGGCACCACCAATTTTGTTCCTTTTTTGGTGATATCTTTTGGTACACTTTTAGCAGCAGTTGGGGTCNTTGTCCCAGGAGCCAACGGCGCCAAGCCCAGGGCTTTCTTTGTCTTTGGAGATTCACTTGTTGACAGCGGCAACAACAATTATTTGGCAACCACTGCGAGAGCCGATTCCCCTCCTTATGGAATTGACTATCCAACTGGCAGACCAACCGGTCGATTCTCCAATGGCCTCAACATTCCCGACCTTATTAGTCAACGACTAGGTGCTGACTCCGTCTTGCCATACCTGAGTCCACGACTAAGAGGCAATAAGCTTCTAACCGGAGCCAATTTTGCTTCCGCTGGAATTGGCATTCTTAACGACACTGGATCTCAGTTTCTAAATGTAATCAGAATGTATAGACAGTTGGATTACTTTCAAGAGTACCAGCATCGAGTGGTCTCTCTAATTGGAGTAGCACGGACTAATGCACTGGTCAATCAAGCATTGGTCCTCATCACTGTTGGTGGCAACGATTTCGTAAACAATTACTACTTGGTGCCTTATTCTGCAAGGTCTCGCCAGTATCCGCTGCAGGATTATGTCAAATACCTCATTGTAGAGTACCGTAAACTCTTGCTGAGACTATATGATCTAGGAGCTCGCAGAGTGATTGTGACAGGCACTGGACCGTTGGGTTGTGTTCCGGCAGAATTGGCCATGCGTGGAACAAATGGGGGATGTTCTGCTGCACTTCAAAGAGCTGCGGCATTGTACAACCCTCAACTACAACACATGGTACAAGGACTNAACAAGAAAATTGGCAGAGACGTTTTTATTGCTGCAAATACGGCACAAATGCATACCGATTTCATTAGTAACCCCAGAGCATATGGATTTACTACATCGAGAGTTGCTTGTTGTGGGCAAGGACCCTACAATGGGCTTGGGTTGTGCACGCCACTCTCTAACTTATGCCCAAACAGAAAATTGTATGCATTTTGGGACGCATTCCATCCTTCCGAAAAGGCGAACAAAATTATTGTGGAGCAAATCATGTCTGGTTCTAACAGATACATGAATCCAATGAACCTCAGCACCGTCCTGGCATTGGATGCTACCACATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	100896	132798	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009104.1	PF00657.17	Lipase_GDSL	40	351	1.70E-28
Glyur000142s00009104.1	PF00657.17	Lipase_GDSL	389	700	2.20E-29
Glyur000142s00009104.2	PF00657.17	Lipase_GDSL	37	347	3.40E-28
Glyur000142s00009104.2	PF00657.17	Lipase_GDSL	439	540	6.20E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.072
SRR1783600	control	0.064
SRR1783602	moderate drought stress	0.048
SRR1811619	moderate drought stress	0.042

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.057
DRR006522	Root Winter glycyrrhizin high producing strain	0.083
DRR006523	Root Summer glycyrrhizin low producing strain	0.028
DRR006524	Root Summer glycyrrhizin low producing strain	0.028
DRR006525	Leaf Summer glycyrrhizin high producing strain	73.903
DRR006526	Leaf Summer glycyrrhizin high producing strain	73.526

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.185
SRR2868004	Drought Stress (root)	0.004
SRR2967015	Control (root)	0.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.917
SRR9715740	Leaf	0.024
SRR9715741	Leaf	3.294
SRR9715739	Root	0.038
SRR9715742	Root	1.941
SRR9715743	Root	2.049

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.024
SRR8749028	MeJA induced 9h	0.027
SRR8749029	MeJA induced 9h	0.032
SRR8749030	Uninduced	0.056
SRR8749031	Uninduced	0.053
SRR8749032	Uninduced	0.067

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.072
SRR8400027	Control - Root	3.444