Gene detail

Gene detail information of Glyur000142s00009103

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G18410.2	transcription activators
NR	XP_004494762.1	PREDICTED: protein PIR-like [Cicer arietinum]
Swissprot	tr\|Q5S2C3\|PIR_ARATH	Protein PIR
trEMBL	tr\|G7L2Z6\|G7L2Z6_MEDTR	Transcription activators protein {ECO:0000313\|EMBL:AES82720.2}

Sequence

Transcript Sequence

>Glyur000142s00009103.1
TGCAATTGAAGACTCTCCCCACAGAGACAGTGGAGGTTTTGAGAGAGAAACGAAGCAATCGTTTGTAGTAGCTGGTCTTTCTTCTTTGTTCTATGCGTTAGGCTTTGTTTCTCTCCTTCAAGCTTACCAGAAGAATTGGTGATGGCCGTACCCGTCGAGGAGGCCATTGCAGCTCTCTCCACGTTCTCGCTCGAGGATGAACAACCAGAGGTGCAAGGACCTGGAGTTTGGGTGTCAACTGAGAGAGGTGCAACAGAGAGTCCAATAGAGTATAGTGATGTTTCTGCATACAGACTATCTCTATCAGAGGATACGAAAGCTCTCAATCAGCTGAACGCCCTTACCCAAGAGGGAAAGGAGATGGCATCGGTGCTTTACACATATCGCAGTTGTGTCAAAGCACTTCCTCAGCTTCCTGATTCTATGAAGCAAAGTCAAGCTGACTTATATTTGGAAACATACCAAGTTCTGGATTTAGAAATGAGCCGTTTGCGTGAAATTCAGCGTTGGCAAGCATCAGCTTCCTCAAAATTAGCCGCTGACATGCAACGTTTTTCTAGGCCTGAGCGACGCATTAATGGCCCTACAATATCTCATTTGTGGTCTATGTTGAAGTTGCTTGATGTTTTGGTGCAACTTGACCATCTTAAAAATGCTAAGGCAAGCATACCTAATGACTTTTCATGGTACAAAAGGACTTTCACACAAGTCAGTGGTCAGTGGCAAGACACTGATTCAATGAGGGAGGAGTTAGATGATTTACAGATTTTCTTGAGCACAAGATGGGCTATTTTGTTGAATTTGCATGTTGAGATGTTCCGTGTAAACAATGTAGAAGACATTCTTCAAGCTCTTGTAGTCTTTGTNGTAGAGTCTTTGGAGTTGGACTTCGCACTTCTATTTACAGAGCGCCACATTCTTTTGCGTGTTTTGCCTGTTCTTGTAGTCCTAGTGACATCATCAGAGAAAGATAGTGAGTCTCTGTACAAGAGGGTGAAAATCAACAGACTGATCAATATATTTAAGAATGAAGCAGTCATTCCTGCATTTCCAGATCTGCATCTCTCTCCTGCTGCAATATTGAAGGAATTATCAACATACTTTCCAAAATTTTCTTCCCAAACTCGCCTTCTCACCCTTCCAGCACCTCATGAGCTTCCACCTCGTGAGGCACAAGAATATCCTCCACATTACACGTATCAGAGACATTATTTGATCATCAATCATATTGGAGCCATTCGTTCTGAGCATGATGATTTCACAATTCGTTTTGCTTCAGCAATGAATCAGCTGTTACTGTTGAAGTCAACGGATGGTTCTGATGTCGATTGGAGCAAAGAAGTCAAGGGGAACATGTATGATATGATTGTTGAAGGTTTTCAGCTATTAAGCAGATGGACTGCGCGCATCTGGGAACAATGCGCTTGGAAATTTTCTCGACCATGCAAGGATGCATCCCCATCATTCTCTGACTATGAAAAGGTAGTACGATATAACTACAGTGCAGAGGAAAGGAAAGCTCTGGTTGAACTTGTGAGCTNCATAAAGAGTGTTGGTTCTATGATGCAACGGTGTGATACACTGGTTGCTGATGCGTTATGGGAAACAATACATGCTGAGGTCCAAGATTTTGTTCAAAACACACTAGCTTCAATGTTGCGGACTACCTTCAGAAAGAAGAAGGACCTCTCTAGGATTCTTTCTGATATGAGGACCCTTTCAGCTGATTGGATGGCTAATACAAACAAGTCAGAATCTGAGTTACACTCCTCACAGCATGGAGGTGAAGAAAGCAAAGCAAACATATTTTATCCAAGGGCAGTTGCCCCAACTGCTGCTCAGGTGCACTGTTTGCAGTTCTTAATATATGAGGTGGTTTCTGGTGGTAACCTTAGGAGACCAGGTGGACTTTTTGGCAATAGTGGCTCAGAAATCCCAGTTAATGACTTAAAACAGCTGGAGACATTTTTTTACAAGCTTGGTTTTTTCCTTCATATTTTAGACTACTCAGTGACTGTTGCAACATTGACAGATCTTGGTTTCTTATGGTTNAGAGAATTTTACTTAGAGTCTTCGCGAGTCATTCAGTTTCCAATTGAATGCTCTCTTCCCTGGATGTTGGTGGATTGTGTACTTGAGTCACCGAACTCTGGTCTTCTTGAGAGTGTTCTGATGCCATTCGACATCTATAACGATTCAGCTCAGCAAGCCTTGGTGTTGCTGAAGCAACGGTTTCTATATGATGAAATTGAGGCTGAGGTTGATCATTGTTTTGACATATTTGTTTCCAAATTGTGTGAAACCATTTTCACATATTACAAAAGTTGGGCAGCAAGTGAATTGCTTGATCCTTCGTTTCTCTTTGCCTCAGACAATGCAGAAAAGTATGCTGTGCAGCCTATGAGGCTCAATATGCTGCTAAAAATGACTAGAGTGAAGCTGCTTGGAAGGATGATTAACTTGCGAAGTTTGATCACAGAACGGATGAACAAAGTTTTCCNTGAAAATATTGAGTTTCTGTTTGATCGTTTTGAGTGTCAGGATCTGTGTGCCATAGTGGAATTAGAAAAGTTGTTGGATGTCTTAAAACATTCCCATGAACTATTGTCAAGAGATCTTTCTGTAGACTCTTTTAGTCTCATGTTGAATGAGATGCAAGAGAACATCTCCCTTGTGTCATTTTCTAGTCGACTGGCCTCGCAGATTTGGTCTGAGATGCAAAGTGATTTTTTGCCAAATTTCATCCTCTGCAATACTACGCAACGTTTTATCAGATCATCAAAGACTGTTCCTGTTCAAAAGCCATCTATACCCTCTGCTAAGCCTAGTTTCTATTGTGGTACTCAAGATTTGAATTCTGCTCATCAAAGTTCTGCACGACTGCATAGTGGATTCTTTGGAATACCTCACATGTTTTCTATTGTTCGACTATTGGGATCCCGATCATTACCTTGGCTTATTAGAGCCCTTCTTGATCACATATCAAACAAGATTACTTTGCTTGAACCAATGATCACAGGATTACAAGAATCCTTGCCAAAGTCAATTGGCCTTCTTCCTTTTGATGGAGGTGTGACAGGTTGTGTAAGACTTGTAAAAGAACATCTTAACTGGGAGACAAAATCAGAGCTGAAAGCTGAGGTTCTTCATGGTATAAAAGAGATTGGAAGTGTATTATACTGGATGGGGCTTCTAGATATTGCGCTGAGAGAAACAGATACTATGAATTTCATGCAAACTTCTCCCTGGCTGGGCTTGCTTCCTGGAGCAGATGGACAAATATTAACTTCTCAAGATGGTGGAGACAGCCCTGTTGTCAGTCTCTTTAAATCAACAGCTGCTGCAATGGTTTCATATCCCGGTTGCCCATCGCCTACATCTTTCCACATCCTGTCAAAACAGGCAGAAGCTGCAGATCTTTTATACAAGGCTAACTTGAATACTGGAAGTGTACTGGAGTATGCGCTTGCTTTCACAAGTGCAGCATTAGATAAATATTGTAGTAAATGGAGTGCTGCACCCAAGACAGGCTTCATTGACATTACAATTTCTAAAGATTTCTATCGAATATACAGTGGTCTCCAAATTGGATACTTGGAAGAGTCTGCCCAAGTGTCATCAAATAGTCATGAAAGGCTGGGAGATTCAGTTGCTTGGGGGGGCTGCACTATAATTTATTTACTTGGGCAACAGCTGCATTTTGAGCTCTTTGACTTCTCATATCAGATCCTCAATATCGCAGAAGTGGAGGCTGCATCTGTTGTGCAGACACACAAGAGCTCGCACATCCCTGTTCAGGGATGGGAAACCTTATTGGAAGCGATGAAAAAAGCAAGGAGATTAAATAATCATGTATTCTCTATGCTTAAGGCACGCTGCCCCCTTGAAGAAAAGACAGCATGTGCTATTAAGCAAAGCGGTGCTCCATTACATCGTATAAAGTTTGAAAACACAGTTTCAGCGTTTGAAACACTGCCACAGAAAGGGGCTTGAACAAGTCGTCAAATTTCGAACTTCCATCAAATTCTGTGCATTGTCCTCTATACGGTGTCTATGTAACGTGTAACGTTGTGGTGTTGTATGTAATAGATAACAGGTAGTTTTATATACTAACGTTGTGGTGTAGTACAATTGAAAATTTTCAAGGGTCCAAATTTCTCACTGTTATCTGGTGGT

Protein Sequence

>Glyur000142s00009103.1
MAVPVEEAIAALSTFSLEDEQPEVQGPGVWVSTERGATESPIEYSDVSAYRLSLSEDTKALNQLNALTQEGKEMASVLYTYRSCVKALPQLPDSMKQSQADLYLETYQVLDLEMSRLREIQRWQASASSKLAADMQRFSRPERRINGPTISHLWSMLKLLDVLVQLDHLKNAKASIPNDFSWYKRTFTQVSGQWQDTDSMREELDDLQIFLSTRWAILLNLHVEMFRVNNVEDILQALVVFVVESLELDFALLFTERHILLRVLPVLVVLVTSSEKDSESLYKRVKINRLINIFKNEAVIPAFPDLHLSPAAILKELSTYFPKFSSQTRLLTLPAPHELPPREAQEYPPHYTYQRHYLIINHIGAIRSEHDDFTIRFASAMNQLLLLKSTDGSDVDWSKEVKGNMYDMIVEGFQLLSRWTARIWEQCAWKFSRPCKDASPSFSDYEKVVRYNYSAEERKALVELVSXIKSVGSMMQRCDTLVADALWETIHAEVQDFVQNTLASMLRTTFRKKKDLSRILSDMRTLSADWMANTNKSESELHSSQHGGEESKANIFYPRAVAPTAAQVHCLQFLIYEVVSGGNLRRPGGLFGNSGSEIPVNDLKQLETFFYKLGFFLHILDYSVTVATLTDLGFLWXREFYLESSRVIQFPIECSLPWMLVDCVLESPNSGLLESVLMPFDIYNDSAQQALVLLKQRFLYDEIEAEVDHCFDIFVSKLCETIFTYYKSWAASELLDPSFLFASDNAEKYAVQPMRLNMLLKMTRVKLLGRMINLRSLITERMNKVFXENIEFLFDRFECQDLCAIVELEKLLDVLKHSHELLSRDLSVDSFSLMLNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKTVPVQKPSIPSAKPSFYCGTQDLNSAHQSSARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHISNKITLLEPMITGLQESLPKSIGLLPFDGGVTGCVRLVKEHLNWETKSELKAEVLHGIKEIGSVLYWMGLLDIALRETDTMNFMQTSPWLGLLPGADGQILTSQDGGDSPVVSLFKSTAAAMVSYPGCPSPTSFHILSKQAEAADLLYKANLNTGSVLEYALAFTSAALDKYCSKWSAAPKTGFIDITISKDFYRIYSGLQIGYLEESAQVSSNSHERLGDSVAWGGCTIIYLLGQQLHFELFDFSYQILNIAEVEAASVVQTHKSSHIPVQGWETLLEAMKKARRLNNHVFSMLKARCPLEEKTACAIKQSGAPLHRIKFENTVSAFETLPQKGA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	82175	99839	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009103.1	PF05994.6	FragX_IP	405	1242	2.40E-158

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.383
SRR1783600	control	12.490
SRR1783602	moderate drought stress	15.342
SRR1811619	moderate drought stress	15.090

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.131
DRR006520	Root Summer glycyrrhizin high producing strain	15.010
DRR006521	Root Winter glycyrrhizin high producing strain	13.380
DRR006522	Root Winter glycyrrhizin high producing strain	12.736
DRR006523	Root Summer glycyrrhizin low producing strain	14.429
DRR006524	Root Summer glycyrrhizin low producing strain	14.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.312
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.505

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.909
SRR2868004	Drought Stress (root)	32.364
SRR2967015	Control (root)	33.207

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.818
SRR9715740	Leaf	8.310
SRR9715741	Leaf	10.194
SRR9715739	Root	7.928
SRR9715742	Root	20.452
SRR9715743	Root	17.373

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.350
SRR8749028	MeJA induced 9h	31.623
SRR8749029	MeJA induced 9h	19.706
SRR8749030	Uninduced	19.652
SRR8749031	Uninduced	13.092
SRR8749032	Uninduced	16.432

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.534
SRR8400027	Control - Root	43.687