Gene detail

Gene detail information of Glyur000142s00009099.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08550.2	6.00E-145	non-photochemical quenching 1
NR	NP_001240949.1	0	violaxanthin de-epoxidase, chloroplastic-like [Glycine max]
Swissprot	tr\|Q9SM43\|VDE_SPIOL	0	Violaxanthin de-epoxidase, chloroplastic (Precursor)
trEMBL	tr\|G0Z355\|G0Z355_SOYBN	0	Violaxanthin de-epoxidase 2 {ECO:0000313\|EMBL:AEK69517.1}

Sequence

Transcript Sequence

>Glyur000142s00009099.1
CGATGCTCTTATCTCATCTAATGCGACGGCGCCTCTCTTCTTCTCTCTTCTTCTTCATTTTAGTTCTTCGTATTATTCTATCTATTATTCCATTGCAGCTGCACTTGCCTCTCACCCACTCTGCAAGTGTCAGGTCACATTTGGATGTGAAGACATAGATATACAAAATATTATTATATGTGTGTATGGCAACGTTGGGTGCAAACTCAATGCTGTTATCCCATCAGGAAGTCACAGGCACTTCCAATGTATGGATAAAAGTAGGCCTAACGGTTAAAGGTGATGCAAGGTTTCACAGAACAAGAAGGTTTCAACATCCTCATAGTGTGGCAGTGTTCAAAGTATTGTCCACCAGTACCAGAAAGCCTACACGCTCGCACTTGTTAAGACCTCAGCGCCATTCTTCCAGTTTGGGGTGGCAGCAACACCACAAAGGGAAAGGAGGAGATTCTTCTCCCACTCCCACAAACATTCCACGGATGTTAGAATTTGCAGCCAATAGGATGCTTGTTTTTCTCAAAGATTGGAGCTATATACCCATCATGGAAGTAGCTGGCATANTGGTATGCATTTTAATGATCACTCCATCAGCTGATGCTGTTGATGCTCTCAAAACTTGTGCTTGTTTGCTGAAGGAATGCAGGATAGAACTGGCTAGGTGTCTTTCAAACCCATCATGTGCTGCCAATATTGCTTGTCTCCAAACTTGCAACAATCGACCTGATGAGACTGAATGCCAAATTAAATGTGGGGACGTGTTTGAAAACAGTGTGGTTGATGAATTCAATGAGTGTGCCGTGTCACGGAAGAAATGTGTGCCTAAGAAATCTGATGTGGGAGAGTTTCCTGCTCCAAATCCTGATGTCCTTGTGAAGAGCTTTAACATTGCGGATTTCAGTGGCAAGTGGTTCATCACCAGTGGGTTAAATCCTACCTTTGATACTTTTGACTGCCAATTACATGAATTTCACACAGAATCCAATAAACTTATGGCTAAATTGTCATGGAGAGTACCAACTCCAGATGCTGGATTTCTTACAAGGTCAGCTATGCAGAGCTTTGTGCAAGACCCTACCTATCCCGGAATCCTCTACAATCATGATAACGAGAATGATGCATGGGATGGATATGGTGGTGCTGTTGTGTACACAAGGAGTGCAGTTTTGCCTGAGTCTATTGTTCCTGAACTTGATAGAGCGGCAAAGAGTGTGGGAAGAGACTTCAGCAAGTTCATCAGAACAGATAATACATGTGGGCCAGAGCCTTCCCTTGTGGAGAGGCTGGAGAAAAAGGTAGAGGAAGGAGAGCAGACCATTGTGAGGGAAGTTGAAGAGTTGGAAGGAGAGGTGGAGAAGGTTGGGAAAACTGAGATCACCTTGTTTCAGAGGTTGGCAGAAGGATTCAAAGTGTTCCAAGAAGATGAGGAAAATTTCTTGAGAGGGCTATCAAAAGAAGAAATGGAGGTACTTGACGGGCTCAAGATGGAAGCTGCTGAAGTAGAAAAGCTCTTTGGACGTGCCTTGCCGATAAGGAAACTGAGATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	59864	62842	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09839	VDE, NPQ1	EC:1.23.5.1	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0009507 chloroplast

molecular_function
GO:0046422 violaxanthin de-epoxidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009099.1	PF07137.6	VDE	199	308	7.60E-62

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.469
SRR1783600	control	3.546
SRR1783602	moderate drought stress	2.733
SRR1811619	moderate drought stress	2.695

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.763
DRR006520	Root Summer glycyrrhizin high producing strain	4.020
DRR006521	Root Winter glycyrrhizin high producing strain	7.251
DRR006522	Root Winter glycyrrhizin high producing strain	7.574
DRR006523	Root Summer glycyrrhizin low producing strain	1.915
DRR006524	Root Summer glycyrrhizin low producing strain	1.900
DRR006525	Leaf Summer glycyrrhizin high producing strain	71.128
DRR006526	Leaf Summer glycyrrhizin high producing strain	71.965

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.437
SRR2868004	Drought Stress (root)	8.195
SRR2967015	Control (root)	5.700

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.925
SRR9715740	Leaf	84.188
SRR9715741	Leaf	47.224
SRR9715739	Root	0.451
SRR9715742	Root	2.992
SRR9715743	Root	1.180

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.128
SRR8749028	MeJA induced 9h	51.876
SRR8749029	MeJA induced 9h	68.522
SRR8749030	Uninduced	74.594
SRR8749031	Uninduced	32.725
SRR8749032	Uninduced	26.302

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.175
SRR8400027	Control - Root	7.228