Gene detail information of Glyur000142s00009092.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02230.1 | 1.00E-54 | phloem protein 2-B1 |
| NR | XP_007147250.1 | 5.28E-116 | hypothetical protein PHAVU_006G108500g [Phaseolus vulgaris] |
| Swissprot | tr|Q6NPT8|PP2B1_ARATH | 5.00E-79 | F-box protein PP2-B1 |
| trEMBL | tr|V7BMN4|V7BMN4_PHAVU | 2.00E-116 | Uncharacterized protein {ECO:0000313|EMBL:ESW19244.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00142 | 38974 | 40194 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000142s00009092.1 | PF00646.28 | F-box | 18 | 62 | 6.00E-09 |
| Glyur000142s00009092.1 | PF14299.1 | PP2 | 112 | 321 | 1.20E-59 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.248 |
| SRR1783600 | control | 1.325 |
| SRR1783602 | moderate drought stress | 1.388 |
| SRR1811619 | moderate drought stress | 1.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.046 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.954 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.239 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.297 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.468 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.775 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.993 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.902 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.698 |
| SRR2868004 | Drought Stress (root) | 7.164 |
| SRR2967015 | Control (root) | 7.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.010 |
| SRR9715740 | Leaf | 0.792 |
| SRR9715741 | Leaf | 0.975 |
| SRR9715739 | Root | 2.892 |
| SRR9715742 | Root | 2.926 |
| SRR9715743 | Root | 2.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.486 |
| SRR8749028 | MeJA induced 9h | 0.292 |
| SRR8749029 | MeJA induced 9h | 0.509 |
| SRR8749030 | Uninduced | 0.209 |
| SRR8749031 | Uninduced | 0.306 |
| SRR8749032 | Uninduced | 0.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.861 |
| SRR8400027 | Control - Root | 1.754 |