Gene detail

Gene detail information of Glyur000142s00009089

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23670.1	1.00E-92	phragmoplast-associated kinesin-related protein, putative
NR	KEH20628.1	0	phragmoplast-associated kinesin-related protein [Medicago truncatula]
Swissprot	tr\|Q8L7Y8\|KN12B_ARATH	3.00E-102	Kinesin-like protein KIN12B
trEMBL	tr\|A0A072TUU7\|A0A072TUU7_MEDTR	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000142s00009089.1
CGTGTTACATATATAATTTTAGAAGTTTGATGATAATTTTGTGCTATTCTCTTACCTGTTGAATGTGTAAATATGTACCTGTTCAATGTGTAAGACATTCTCTCGCGCGGAGGATGTGACTCAGCTTTTGATAAAGGTGTGCTTCATCATACTTGTATTATAAGTGTTTTCTTTCTTTTATGGCCTCACTTTTGAGTATCCTGCTAAGGTGGAATATCTAACAATATGATTAGCCNTTGTAGAACTAGTCTGAGACTGTTGTTCCGTAGCAGGTTAATTTTTTATGCTCTGAAAGCATGNACAGCTGAATGCCAAATATTCATCTTGTTCATGGTTGGCAAATTAATTGATTTTGTGTCATGCAGCTATAATAAATGCATTTAATTTAAATTTAATATAGAGCAAAAACAGATATTCAACAATATATCAGCAAAACATTGATTTTNTTTTATTTTATTATATCTTNTTTTGTGTGTTTATTTTTATACTTATGGGCTCCACATTTCGTAGCTGCTATGGTTTCCCTTTTTCTGATTATCCTTCATTATTATATCTTTTGTGTTTCCACTATATTGTACCTTTCATTATGCAGGGATTGTTAAACAGGAGAGTAGGTGCAACCAGTATAAATTCTGAAAGTTCCCGTTCACATGCTGTTTTTACTTGTGTTGTTGAATCTCGATGCAAGAGCATCGCAGATGGTATAAGCAGATTTAAAACAGGTAACCTTGTTTATTTAGCTGGGTCAGAACGACAAAAATTAACAGGTGCAGCAGGAGACCGTTTGAAGGAAGCCGGCAATATAAATAGATCACTTTCACAGCTTGGGAATTTGATTAACATTCTTGCTGAAGTTTCTCAAACAGGAAAGCAGCGGCATATACCATACAGAGACTCCAGGCTGACATTTTTATTGCAGGAGTCTCTTGGAGGAAATGCAAAATTAGCATTGGTTTGTGCTATTTCCCCAGCACAAAGTACATTGAGATTTGCACAACGTGTCAAAGCTATCAAGAACAAAGCAGTTGTTAATGAAGTAATGCATGAGGATGTGAACCAATTGCAATTGCGAGAAGTGATACGTCAGCTCAAAGATGAGCTGCATCAAATTAAAACAAATGGTTACAGACCAAGTGATGGAAGTGGAGGTCATTCAGCAGCTTGGATCCGAAGAAGTTTGAATTTATTAAAGTCTAGCCTCCATCGCCCATTATCACTACCTCATGTTGATGATGATGGTCATGAGGTGATGGAGATTGACGAGGAAGGTGTTGAGGACCAGGCTGTAGTTCTCCCCAATTCCAGCGAAGGCATTATTGGTTTTTCTGCCACCAAGGGATCCATTGATTTTCCCAGTGCTGCAATGAATTGCAATAACCCTGCTAGCCTCGGCATTGTCCAATGCAATACATACCCCGTCCTCAAATCTCCAACTCCCAGTGTTTTGCCAACAATCAGCAGCAGCAGGAAAACAAGCATCCGCCATGGTCTTGAAATTATTGATAGCTACCNTCATAGTGCAGCTCTGGGGAAGTCATCATTGAGGCTCTCATCAAGACCTAAAGATTCCAGGCTAGTAGTTTTTCCAGTGGACAAAGTTGATGTTGGAGTGCAGACTTTTCTCTATGATAATGCCACAAAAGAAGATTCTGTTGTGTTTACCTGTAATAACTGTAAAAGTAGAATGCAGCTTGATGTCAATAAGATTGACAATAACTCAAACATGCAGTTGGTTCCTGTTGATTGCGCTGAGTCTGCTGATNAGCCAAAGAAGCAAGTTCTCAAAGCAGTAGAGAAGGTTTTGGCAGGATCCATAAGGAGAGAAATGGCACTGGAAGAGTTTTGTGCAAAGCAGACTTCTGAGATAATGCAGCTTAATCACTTGTNGCAACAGTACAAGTATGAGAGGGAATGCAGTGCCATAATAGCACAGACAAGGGAAGATAAAGTTCTTCNCCTTGAGAGCCTTATGGNTGGTGTTTTGCCCACGGAGGAATTCATGAACGAAGAGCTGGTGTCCCTCACACATGAACACAAGGTAGAAATAAGTTCTTGTTATGGTTTCCCTTTTATGGTTACTACATTTGATGCTTATATTTAAGACTTACCTACGATCAGCATTCCATAGCTTTTAAAGGAGAACCATGAGCATCATCCAGAAGNTATGAAGATGGAGACAGAGTTAAAAAGAGTACAAGATGAGCTACAAGAGTATCATAATTTCTATAAATCTGGGGAGAGTGAAGTGTTTGATGGAAGAGATATGCAGTCTAAGAAATCAGCTTCACTTTTATATAGACTCATCATCCACATCTGGAAGAGTATCATGATCGGACTAGATGACCCATTTCGGGATGAGATATTTACCCAAAATGTCAATTTCTTTGTGAAATCGGACCGGTATGCAATTTTCAGACTCAATGACCTTTTTTGGAATGAGTTATTTACCCAAAATGTAAAGAAATCGGGACGGTATGCATGATAGGACTCGATGACCCTTTTCGAGATGAGTTATTTACCCAAAATGCCAATTTCTTTGTAAAATCAGGATGGTATGCACGATCGACTCGATAACCCGTTTTGGGATGAGTTATTTACCCAAAATGACGATTTCTTTGTGAAATCGGGACGGTATCCAATTTTCAAACTCGATGACCCTTTTTGGGATGAGTTATTACCCAAAATGCCGATTTCTTTGTGAAATCAGGACTGTATGCACTTAGATGACCCTTTTCGGAATGAGTTATTTACCCAAAACGCCGATTTCTTTGTGAAATCAAGATGGTATGCATGACCGGACTGATGACCCTTTTTGGAATGAGTTATTTACCCAAAATGGCGATTTCTTTGTGAAATCGGGACTGACGGTATGCAATTTTCGACTCGACGACCCTTTTCAGAATGAGTTATTTACCCAAAACGTCGATTTCTTTGTGAAATCAAGACGGTATGCATGATCGGACACGATGACCCTTTTTGGAATGAGTTATTTACCCTAAATGTTGATTTCTTTGTGAAATTGGGACGGTATGCACTCGATGACCCTTTTCGAAATGAGTTATTTACCCAAAATGCCGATTTCTTTGTGAAATTGAGACATTATATTTTTCGGGATGAGTTATTTACCCAAAATGCCGATTTCTTTGTGAAATCAAAACGGTATGCACTCAATGACCCTTTTCGGAATGAATTATTTACTCAAAATGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00142	24059	28215	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000142s00009089.1	PF00225.18	Kinesin	28	174	2.20E-43
Glyur000142s00009089.1	PF06548.6	Kinesin-related	328	517	2.50E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.063
SRR1783600	control	2.077
SRR1783602	moderate drought stress	3.610
SRR1811619	moderate drought stress	3.444

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.819
DRR006520	Root Summer glycyrrhizin high producing strain	1.060
DRR006521	Root Winter glycyrrhizin high producing strain	3.092
DRR006522	Root Winter glycyrrhizin high producing strain	2.787
DRR006523	Root Summer glycyrrhizin low producing strain	1.640
DRR006524	Root Summer glycyrrhizin low producing strain	1.679
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.175
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.198

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.331
SRR2868004	Drought Stress (root)	3.984
SRR2967015	Control (root)	4.419

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.643
SRR9715740	Leaf	0.940
SRR9715741	Leaf	2.018
SRR9715739	Root	0.069
SRR9715742	Root	1.521
SRR9715743	Root	1.215

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.459
SRR8749028	MeJA induced 9h	1.439
SRR8749029	MeJA induced 9h	0.313
SRR8749030	Uninduced	0.709
SRR8749031	Uninduced	0.724
SRR8749032	Uninduced	1.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.912
SRR8400027	Control - Root	3.830