Gene detail information of Glyur000141s00009844 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G12340.1 | 1.00E-43 | |
| NR | XP_003617275.1 | 1.54E-110 | hypothetical protein MTR_5g089820 [Medicago truncatula] |
| trEMBL | tr|G7K362|G7K362_MEDTR | 6.00E-111 | DUF4228 domain protein {ECO:0000313|EMBL:AET00234.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00141 | 301253 | 301954 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000141s00009844.1 | PF14009.1 | DUF4228 | 1 | 202 | 2.40E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.816 |
| SRR1783600 | control | 0.870 |
| SRR1783602 | moderate drought stress | 0.427 |
| SRR1811619 | moderate drought stress | 0.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.903 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.911 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.157 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.158 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.132 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.028 |
| SRR2868004 | Drought Stress (root) | 22.927 |
| SRR2967015 | Control (root) | 14.914 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.741 |
| SRR9715740 | Leaf | 2.006 |
| SRR9715741 | Leaf | 9.172 |
| SRR9715739 | Root | 0.843 |
| SRR9715742 | Root | 1.039 |
| SRR9715743 | Root | 1.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.062 |
| SRR8749028 | MeJA induced 9h | 9.530 |
| SRR8749029 | MeJA induced 9h | 3.519 |
| SRR8749030 | Uninduced | 63.970 |
| SRR8749031 | Uninduced | 78.221 |
| SRR8749032 | Uninduced | 29.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.022 |
| SRR8400027 | Control - Root | 6.741 |