Gene detail

Gene detail information of Glyur000141s00009836

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G49725.1	2.00E-118	GTP-binding protein, HflX
NR	XP_004491256.1	0	PREDICTED: GTP-binding protein At3g49725, chloroplastic-like [Cicer arietinum]
COG	YP_756679.1	6.00E-58	small GTP-binding protein [Maricaulis maris MCS10]
Swissprot	tr\|Q0WTB4\|Y3725_ARATH	4.00E-161	GTP-binding protein At3g49725, chloroplastic (Precursor)
trEMBL	tr\|G7KCX1\|G7KCX1_MEDTR	0	GTP-binding protein HflX {ECO:0000313\|EMBL:AET00246.2}

Sequence

Transcript Sequence

>Glyur000141s00009836.1
GAAGCGTAGAAGAAGAAACAGTAACAGTATCGATAGATAGATAGATAGATAGATAGAATGTTGAGAAACTTGTGTGCGGCACTCGAATCTTCCAGAAAGACCCTAACTTCACTTACTCCAGCTCCTTCCAGATGGTGGGCACCTTGTTCTTCTGCTTCTCCCTATTCCAGCAGCTTCTCCTCCTTGAACCAGAGCGATGATCCTGCACTTGCGACCCCACCGAAGCTTATGGTGGTGCAGCCCCGTCTCCGCCCCGAGAAGTTGTTGCAGGCGAAGCTGAACGAAGCCTTATGTTTGGCCAATTCGCTGGAAGAACAGCGCGATGGGTATTTCCACACCGATTTTTTCGACAAGCCATTGCCTCCTCACCTCCTCGTTCAGAACCCTTCCCTCAAAGGCCACAAACCTCGCGCTGATAGAATGTTGAGAAACTTGTGTGCGGCACTCGAATCTTCCAGAAAGACCCTAACTTCACTTACTCCAGCTCCTTCCAGATGGTGGGCACCTTGTTCTTCTGCTTCTCCCTATTCCAGCAGCTTCTCCTCCTTGAACCAGAGCGATGATCCTGCACTTGCGACCCCACCGAAGCTTATGGTGGTGCAGCCCCGTCTCCGCCCCGAGAAGTTGTTGCAGGCGAAGCTGAACGAAGCCTTATGTTTGGCCAATTCGCTGGAAGAACAGCGCGATGGGTATTTCCACACCGATTTTTTCGACAAGCCATTGCCTCCTCACCTCCTCGTTCAGAACCCTTCCCTCAAAGGCCACAAACCTCGCGCTGACACCTATTTTGGGCCTGGAACTAGGGCTTGGAATAAACCTGTAATGGACCGTGTGGGCCTTATAATTGAGATATTCAATGCTCATGCCTTCACCAAGGAAGCCAAGCTCCAGGCTGAACTGGCAGCTCTATCGTACAAGAAGACGAGACTTGTTCGTGTTCGTGGCCCAGGTGGTCGCTATACATTTGGTGCTTCTGGAGAAACTGAAGTTGTTAGTGCCCGAGGGAGAGGAAGTGGGGGCCAAGGTTTTATTAGTGGTGCTGGAGAAACTGAACTTCAGCTTCAGCGACGAAGGAGAAATAATCTATTAACACAAATTGAAGAGGTTCGTCGTACCCGGGCTTTGCAACGTGCTGGTCGGAAGAGGCATGGAGGTTCATTTGGACAAGGCTTAGCCACCGTTGCTGTTGTTGGGTATACAAATGCTGGAAAATCTACATTAGTTAGTAAGCTATCGGACAGCGACCTGTATAGTGATTGCCGACTGTTTGCAACAGTTGATCCTAGATTAAGAAGTACTGTTCTTCCTTCGGGGAGGAAAGTGCTTTTAAGNGACACAGTAGGATTTATATCTGATTTGCCTGTACAGTTGGTGGAAGCATTTCATGCAACTTTAGAAGAAGTGGTGGAAGCAGACCTGCTTGTGCATGTGGTGGATTCAAGTGCTCCCAATCTTGATGAGCATCGCTCAACAGTGTTGCAAGTTCTTCAACAAATAGGGGTATCNGAAGAGAAGCTTCAGAATATGATTGAAGTTTGGAATAAGATTGATGTTGAAGCAGAAGAGTGCATGGAAGATGTTGATGAATATCTTGATGAAGATGAAGAAGAGGCTGATGAAACTAGCAGCTTTAATGGAGAGGAGGATGTGAATACCGAGACATTAACGGAAACAGAAAAAGACTATGCTGGCAGTATTTCTGGTGCAGAAAAAGAAGACTATTCTGATGGTTGGTTGTATGAGGATACTTTGGTTGATGAAGTTGATTTTTGTTCTTCGCCTTCATCTGCGGCTGACGAACAAAACGAGTCCTCTTCTAATAAGGACAATCACAATGGTGTGGAAAAGGATAGCACAATCATGGGACAGTCTGGTCCACATGTGAAAACATCTGCCATCACAGGAGTTGGCTTGCAAGAGTTGATGGAACTAATAGACAAGAAACTAAGTACCAATGATGAGAAATTGAAGGGTGCACAAGTGGTTGAAAGAAATTTCTTTGATAGAAAATGGAGGCCCTCTCATACTCAGGATTCTAGCATTGCAGTTGAACAGTAGCTTGTTCTATGGACCTAGTTTCTTTCCTTGCNTTTTCTGCTACATCATCTTTTGCTAGTTAACAGCTGCATTATCATTAAAAAAAAAATCTGGGGATTAGGCAAGTTTATCTTTCTGCTTTCCCCACCACTTGGTGAAGCTGTTTAATGCTGAAGATATCAAAGACGCTCGTGTTTGTGGCATTCATCTTCTGTCTCAACTCAACCTTCAAGCTATCAGCCTTTCACGAACATAGTTCAAGTTTTTATTTTTAAATTAAAAATAAGTTTACATGTTTTCCTTGGTAGTGTGTTGCAAAGCTTAGCCAGTTTTGTTTTTTGCCTAATGGGTTTGGTTCATTAATGTATAATTAGAATGATAGCTGCAGAATGTAGTGATATATAAATAAATCTATAATTTTGTAAAACATTAGATATATTTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00141	234363	241433	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000141s00009836.1	PF01926.18	MMR_HSR1	375	495	3.20E-15
Glyur000141s00009836.2	PF01926.18	MMR_HSR1	375	472	1.70E-06
Glyur000141s00009836.3	PF01926.18	MMR_HSR1	254	374	2.30E-15
Glyur000141s00009836.4	PF01926.18	MMR_HSR1	254	351	1.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.569
SRR1783600	control	5.591
SRR1783602	moderate drought stress	7.998
SRR1811619	moderate drought stress	7.807

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.962
DRR006520	Root Summer glycyrrhizin high producing strain	9.686
DRR006521	Root Winter glycyrrhizin high producing strain	21.590
DRR006522	Root Winter glycyrrhizin high producing strain	21.257
DRR006523	Root Summer glycyrrhizin low producing strain	9.847
DRR006524	Root Summer glycyrrhizin low producing strain	9.836
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.254
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.285

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.505
SRR2868004	Drought Stress (root)	12.300
SRR2967015	Control (root)	14.352

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.014
SRR9715740	Leaf	7.951
SRR9715741	Leaf	11.960
SRR9715739	Root	1.553
SRR9715742	Root	10.097
SRR9715743	Root	8.981

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.631
SRR8749028	MeJA induced 9h	5.846
SRR8749029	MeJA induced 9h	6.260
SRR8749030	Uninduced	5.967
SRR8749031	Uninduced	2.989
SRR8749032	Uninduced	3.381

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.520
SRR8400027	Control - Root	16.117