Gene detail

Gene detail information of Glyur000141s00009832

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G34470.1	2.00E-120	Protein of unknown function (DUF803)
NR	XP_003545391.1	0	PREDICTED: magnesium transporter NIPA2-like isoform X1 [Glycine max]
Swissprot	tr\|Q9LNK7\|NIPA3_ARATH	5.00E-151	Probable magnesium transporter NIPA3
trEMBL	tr\|I1M734\|I1M734_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G03790.1}

Sequence

Transcript Sequence

>Glyur000141s00009832.1
CGGGAATAATTGGGGTGTGGTCGTTCGCACCCTATCTTTCCCAGCTTTCCATTGGACAAATGATGAAATGAGCAATGATGATGATCTGAGGAACCGTGTTTGTCTCAGAGCTTATGGATGAAGAGAAGAACAAAGAAGAAAGAAGAAGAAGAAGAGATCCAAAATCAGAAGAAAGTAACGATTTTTCAACATGGGTCTGTCCAAAGAGAACATAAAAGGCCTCATTCTAGCGTTGGTGTCAAGTGGGTTCATTGGGGCAAGTTTCATCATTAAGAAGCAAGGCCTCAGAAGAGCTGCTGCTATTTTTGGTGTCAGGGCTGGTGTTGGTGGGTATTATTATCTCTTGGAACCACTCTGGTGGGTTGGAATGATCACAATGATTGCAGGAGAGGTTGCAAACTTTGTTGCATATGCATTTGCCCCTGCTGTTCTAGTTACCCCTCTTGGTGCATTAAGTATCATTGTGAGTGCTGTTTTGGCTGATATTATTCTGAAAGAGAAGCTGCATCAGCTTGGGATATTGGGCTGTGTAATGTGCATTGCTGGTTCTATCATTATTGTTATTCATGCTCCTAAGGAGGAACCTATCAAATCTNTTCTGGAGATATGGGAAATGGCTACTCAACCAGCATTTCTGGCATATGTGGCCTCCGTAATAGTATTGGTTTTCATTCTGGTTTTCCATTTTGCACCAAGATGTGGGCATACCAATGTGCTAGTTTATACTGGCATTTGTTCATTGATGGGTTCCCTCTCTGTGATGAGTGTTAAAGCCCTTGGAACGTCTTTGAAATTAACTTTTGAAGGGAAAAATCAGTTAACTTACCCAGAGACATGGTTCTTTATGTTAGTTGTGGCCATATGTGTTATCNTGCAAATGAATTATCTTAATAAGGCTCTTGACACCTTCAACACAGCAATTGTGTCTCCTATATACTATGTCATGTTTACCACACTTACAATACTAGCCAGTGTAATAATGTTTAAGGATTGGGATGGCCAAAGTGGTGGAACCATTGTGTCAGAATTATGTGGCTTTATTGTCGTGCTCTCTGGCACAATAATGTTACACGCAACCAAGGACTTTGAGAGAAGCCCTTCCTATAGAGGTGGCTCACCTTCATCACCTACATTATCGGTCCGGCTTTATACCGGAAATGGGGACTTGTTACTTAAGCAAGATGAGGAAAATGTATCTCCTGATAGTATGTGCTCAAGAAGGCAAGAATCATGTTAGATGGTTTTGTATATGACACAGCAAAGGTCTTATTAATTCATTTAGTCATAAGGGGAAGGTGAACCTTTCCCTGGAGAACTGAATGAGAACCCCATCAGATGGTAGCATGCAGCTGCAGGTACTAATTAATGAAACCATAGAATGGTGGGAGATTTCTGAAGCCATTCTTTTACTATGAGCATCTCAGGAATTTTATCCACCTAGATTTTTCAGTTTGGACTTTGCAAGATGGTTCTGGGAGCTAATTCATTGCAAGGTACATAAGGTACAGTGTGTTCTCAGTTGCTTGTGTCACAGATAAATGTGTTTGCTTCAGCTGGTCATTGGATTGAGATTAGTTCTGTGTGTGAAGGCTCTTTTTACATGAACAAAGGAAAGTGAGGATAGGGACTAGTTTGTCCAAACCATCTATCTGCATGGTGATTTTGTTATTGTATTTTATTTTATTTTTGTTGGCAATTTGGCTTAGCATATTACAAGATTCATTTGTGGTTTTGTAAGTAGTGAGATGTACAGGGAACTAAGCAAATTCNTATCAACATTGTAGTTTCCTTATGAATAAGAAATAATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00141	220586	224718	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0015693 magnesium ion transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015095 magnesium ion transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000141s00009832.1	PF05653.9	Mg_trans_NIPA	5	301	1.70E-135
Glyur000141s00009832.2	PF05653.9	Mg_trans_NIPA	5	266	5.50E-120

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.953
SRR1783600	control	6.846
SRR1783602	moderate drought stress	6.109
SRR1811619	moderate drought stress	6.156

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.447
DRR006520	Root Summer glycyrrhizin high producing strain	14.668
DRR006521	Root Winter glycyrrhizin high producing strain	20.582
DRR006522	Root Winter glycyrrhizin high producing strain	20.692
DRR006523	Root Summer glycyrrhizin low producing strain	31.142
DRR006524	Root Summer glycyrrhizin low producing strain	31.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.886

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.096
SRR2868004	Drought Stress (root)	23.906
SRR2967015	Control (root)	21.266

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.333
SRR9715740	Leaf	20.558
SRR9715741	Leaf	25.456
SRR9715739	Root	8.916
SRR9715742	Root	15.238
SRR9715743	Root	15.678

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	31.661
SRR8749028	MeJA induced 9h	52.203
SRR8749029	MeJA induced 9h	51.485
SRR8749030	Uninduced	89.856
SRR8749031	Uninduced	144.481
SRR8749032	Uninduced	66.805

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.532
SRR8400027	Control - Root	26.626