Gene detail information of Glyur000141s00009830.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G13370.1 | 0 | chromatin remodeling 5 |
| NR | XP_006575632.1 | 0 | PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Glycine max] |
| COG | YP_004462436.1 | 2.00E-64 | SNF2-like protein [Mahella australiensis 50-1 BON] |
| Swissprot | tr|F4IV99|CHR5_ARATH | 0 | Protein CHROMATIN REMODELING 5 {ECO:0000303|PubMed:16547115} |
| trEMBL | tr|I1JIZ0|I1JIZ0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G45000.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00141 | 195487 | 212615 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000141s00009830.1 | PF00385.19 | Chromo | 461 | 492 | 5.20E-05 |
| Glyur000141s00009830.1 | PF00385.19 | Chromo | 534 | 588 | 2.50E-15 |
| Glyur000141s00009830.1 | PF00176.18 | SNF2_N | 628 | 895 | 9.10E-53 |
| Glyur000141s00009830.1 | PF00271.26 | Helicase_C | 957 | 1036 | 8.50E-16 |
| Glyur000141s00009830.1 | PF13907.1 | DUF4208 | 1509 | 1608 | 2.20E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.752 |
| SRR1783600 | control | 8.641 |
| SRR1783602 | moderate drought stress | 9.678 |
| SRR1811619 | moderate drought stress | 9.657 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.047 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.691 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.474 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.984 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.336 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.358 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.391 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.990 |
| SRR2868004 | Drought Stress (root) | 22.841 |
| SRR2967015 | Control (root) | 23.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.238 |
| SRR9715740 | Leaf | 11.035 |
| SRR9715741 | Leaf | 15.549 |
| SRR9715739 | Root | 1.242 |
| SRR9715742 | Root | 9.154 |
| SRR9715743 | Root | 7.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.899 |
| SRR8749028 | MeJA induced 9h | 14.781 |
| SRR8749029 | MeJA induced 9h | 6.416 |
| SRR8749030 | Uninduced | 11.042 |
| SRR8749031 | Uninduced | 17.710 |
| SRR8749032 | Uninduced | 10.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.591 |
| SRR8400027 | Control - Root | 18.175 |