Gene detail

Gene detail information of Glyur000141s00009825.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G23820.1	0	Pectin lyase-like superfamily protein
NR	XP_003617307.1	0	Glycoside hydrolase family 28 protein [Medicago truncatula]
COG	YP_001179193.1	2.00E-58	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	9.00E-137	Probable polygalacturonase
trEMBL	tr\|G7KCZ1\|G7KCZ1_MEDTR	0	Polygalacturonase/glycoside hydrolase family protein {ECO:0000313\|EMBL:AET00266.1}

Sequence

Transcript Sequence

>Glyur000141s00009825.1
CTTAGTGCAGACTGTAGAAGCACCAGCGAGTGTGTGTGTCTGTCTTATCTCAATTCTCGTTGCATCTGAATTGGGACACACAAAGATGTTCCTCGGATTAGTACCGAGGCTAACCTTGGTGTTGGTGTTGTGCTGCTTGTTGATGAACTGTTGNTGTTGGAGTGAGGGTGGGGAAGTGGTGACAACGACGTGCTCCAACATAGTGCCGGTGAGGGATCGCACCGACAAAATCTCGTTAACGGATTTCGGAGGGGTGGNTGATGGGTTCACCCTCAACACCAAGGCATTCAGGGAGGCGGTGTACAGGATTCAGCGATTGCCGAGGGAAGGGGGCACCACNCTTTACGTGCCTCCGGGGGTATACTTAACGGAGCCCTTTAATCTCACCAGCCATATGACCCTTNACCTTGCTGCTGCTGCTGTTATCAAGGCCACACAGGATTCATCGAATTGGCCTTTAGTTGCGCCCTTGCCATCTTATGGAAGAGGAAGGGAGCTTCCTGGAGGAAGGTATATAAGCTTTATCCATGGAAATGGAGTTCAGGATGTGGTTATCACAGGTGAGAATGGGACAATTGATGGGCAAGGAGATGTATGGTGGAATATGTGGAGGCAGAGAACTCTTCAATTTACCAGACCAAATCTAGTTGAATTTGTGAATTCCAGAGATATTGTTATTTCAAATGTGGTCTTCAAGAATTCTCCCTTCTGGAACATTCACCCAGTTTACTGCAGCAATGTTGTTGTTCGATTTGTCTCAATTTTGGCTCCACGTGACTCTCCTAATACTGATGGCATTGATCCAGATTCAAGTTCAAATGTTTGCATAGAGGACTCATACATATCCAATGGAGATGACATTGTGGCTGTGAAGAGTGGATGGGACGAATATGGGATTGCTTACGGTCGCCCGAGCTCCAACATCACCATCCGGCGTGTGAGCGGATCGTCTCCATTTGCGGGGATTGCCGTCGGCAGTGAAGCCTCNGGTGGGGTGGAGAATGTACTTGCTGAGCACATCAACCTNTACAACANGGGAGTTGGTATCCACATCAAGACAAACATTGGAAGGGGAGGGTACATAAAGAACATAAGTGTGNCTCATGTGTATATGGAGGGTGCAAGGAAAGGGATAAAGATTTCAGGTGATGTTGGGGGACACCCTGATGACAAATTTGATCCCAATGCTATCCCTATTGTAAAGGGTATCACAATTGAGAATGTGTGGGGTGTGAAGGTTTTGCAGGCTGGTCTAATACAGGGATTGAGGAAGTCACCTTTCACTGATATTTGTCTATCTGATATCAACCTTCATAATGGGGTGACAGGAACAGGAACAGGAACAGGAACTAGTAGAAGAAGTACTCCACCACCTTGGAAGTGTAGTGATGTGGTTGGAGTTGCTCATCAGGTTAGTCCATGGCCATGTTCTGAGCTTATCAGCCACCAGGNTGGATCATGTGCCAATTACTACTCCTAAGATAGTAACATTGATCATGGCAATGAAGTTGTTCATTTGTTAACAATTCACTCCAGTGAGTCAGTGTTTATATGAAACCGTTAAGAGCCTGCAGGAGAAAGGTCACCTCTCTGTTCCAAACAAAGAAGAAGATTCATTGCAGTGAAATCCTAAACCAGCTACCCCTCTGAATTCAATTCAATTTCTCAACGAGTTCAATTTAGTACAAGATTAAGATAATTAAGCAGCTTTTAGCAATCTGGGCATGTTATATTATAGGGGATCCTAACTATAGAAGAGACTGTATTTGGACTTTGTAATTATGAAAGACGTTATGCAAGTTAGCATGTGTTTGGATCTGCATTTGGAGGGCCTGACGCAAAGCTCTAAGTTGGAGATTCTAGGTGGACATGCAGCTGTGATGGTCCTAACTCCTACAGCCGTACCAAACACACGCTTAATCGTTGTCGTGTCTGAACCTATTAATATTAATGGATTTTCTTCCCCTCTTTGAATTTTCCTTTTCCTCAATTTCTTTTTATCGTTTCCTTTAAGCATGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00141	146566	150483	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000141s00009825.1	PF00295.12	Glyco_hydro_28	145	412	5.80E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.091
SRR1783600	control	10.083
SRR1783602	moderate drought stress	9.328
SRR1811619	moderate drought stress	9.082

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.799
DRR006520	Root Summer glycyrrhizin high producing strain	13.322
DRR006521	Root Winter glycyrrhizin high producing strain	8.691
DRR006522	Root Winter glycyrrhizin high producing strain	9.293
DRR006523	Root Summer glycyrrhizin low producing strain	8.322
DRR006524	Root Summer glycyrrhizin low producing strain	8.108
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.063
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.953

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.014
SRR2868004	Drought Stress (root)	19.082
SRR2967015	Control (root)	20.430

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.762
SRR9715740	Leaf	15.657
SRR9715741	Leaf	13.387
SRR9715739	Root	12.389
SRR9715742	Root	11.847
SRR9715743	Root	11.841

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.451
SRR8749028	MeJA induced 9h	7.753
SRR8749029	MeJA induced 9h	6.750
SRR8749030	Uninduced	4.483
SRR8749031	Uninduced	2.607
SRR8749032	Uninduced	2.855

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.565
SRR8400027	Control - Root	23.758