Gene detail

Gene detail information of Glyur000141s00009820.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G30330.1	4.00E-83	auxin response factor 6
NR	KHN12007.1	0	Auxin response factor 6 [Glycine soja]
Swissprot	tr\|Q653U3\|ARFQ_ORYSJ	1.00E-111	Auxin response factor 17
trEMBL	tr\|I1M725\|I1M725_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000141s00009820.1
CTTTTTTCGATTTTCTCTCTGCACACATCACAGGCACAGCACAGCACACTTTTTTCTGCTTCTTCTGCTGAAATCCACGAAACCCACGNCACCACATGAGTGTCACTCTCTTCGCTTCACTTCTCTCTCACTCCCTCTAATTCCACTGTTTTTTTGTTTGTTTTGACTTGAGATCTGGTGAAGTTAAGTTGGTTAGGGTTTTTTGTATTTTAGCTTAGCTTCCTCAAATTAGGGCTTGTTGCAGAAGAAAAACGGTGGATTTTGAGTGTAGTGCTTGGTATGAAAACCACGAGGATTGGGTTTTGCATTGCAATTGGTTTTGGATGACGGATGTTGCATAACTTCAATTGGGAGGGAGGGTGGGTTTGGGGGGGTAGTGATTCGAAGTAACATGTGAACCGTGTGTGGGTAGTGCTCTTTTATTGAGGTTGGGTTTGGATTTTCACTAGTTTGGAACTTCGTCTGTGGCTGAACCTGAAAGCATGAAGCTTTCTTCTCCTGGATTTAATCAACCGCTTGAAGAAGAAGGTCTTAAGGATGGTGACATGAACATTGGTTCTCCATTCATGTGGCTTCAAGGTGGGCTTGGNGATCAAGGAATGCAATCTTTGAACTTCCAGGGGCTTGGCGTTGCACCTTGGATGCAACCAAGACTTGATGCTTCTATAACAGGTCTCCAACCAGAGTTATACCAAGCAATGACCTCTGCTGCATTCCAGGAAATGAGAACAATGGATCCTTCAAAATCTGCTNCTCAATCTCTGTTGCAGTTTCAGCAGACTTCAAATATTCCCTCTGCTCATACTTCNGAGATACAGAGGCCAGTATTACCACAGTCTCAGCCCCAAAACACCCTTCTACACAATTTTCAAGAAAACCAGGTGCCTGCTCAGTCACAACTTCTGCAACAACAGTTGCATCGTTACCANCCATATGGTGATCAGAGGCAACAACAGCAGCAGCAGCAGCAGCAACTTAAAAACTTGCCTATTCAGCAGCAGTTACCAGATGCCATTTCTCCTTTGTCCAATTTTGCATCAGGTGCACAGTCTCAATCTCCATCCGTGCAAGCCTTAGCTTCACACTGCCAGCAGCAGAACTTTCCCGAACCTATGAGGAGTCATATTTCCAGTTCTGATGTTTCCACCATCCAGAGTCTACTAGGTTCATTCTCTCAGGATGGAACATCCCAATTATTTAATTTGAATGGACCCAATTCCGTTATATCTTCTGCAGCCATGCTACCCAAGCAAGTAACTGTTGGGTCTCAGCTTCCATCTGCTGCTGCTCAGTGTGTATTGCCTCAGGTGGAAAACATGGGAACATCACAATCAAATGTGTCTGAGCTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATATCAAGCTGCTCCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGACCCCTCTTCTCTTATGCTGCAAAATGGCATGCCGAACCTGAGAAATATAGGCAATGTAAATGATTCATTGTCATTGCCATTTTCTGGTTCAAACTGTGGTGGTACGACGGACACTGATTTTCCCCTAAGTTCAAACATAACTTCAAGTTGTGTGGATGAATCTGGTTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTCAAGGTTCACAAGTCAGGGTCCTTTGGGAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTCGCTCGCTTGTTTGGCCTTGNAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACAGGGAGAACGATGTTCTTCTTCTTGGTGACGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATACTGTCTCCTTTAGAAGTNCAACAAATGGGCAAAAGTGTTAGTACTTCTACTTCTGCCCCAGGTGACAAACTTCCTACTGCTGGCAACTCTTGTGATAACTATGTGAATCAACANGAGTTGAGAAGTTCGAGAAATGGCATGGCATCAATGGGAACTTTTCACTACTAGAACCTTCTGCTTCTAAGTATTTTTAGCTGAAAATTTATGGTGGCAGAATCTTTATGTTAAACGTTTCTTTTGTATGGATCGGCCCAGCATTCTTATACACATTAATGGTGGACATGTAGTGCTTCACTGCCTCTACAAGGTCTATATAGATCAACAGCAAATGACTGTAAATTATAATAGGTGACCGTGTTTCTGTAATGGTTAGTTGCTTATAGCAGTTATAATTATTCTCTTTTGGTTCTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00141	127325	134646	-

Gene family

Gene family	subfamily
Transcription Factors Family	AUX/IAA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000141s00009820.1	PF02309.11	AUX_IAA	384	482	9.20E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	48.318
SRR1783600	control	48.217
SRR1783602	moderate drought stress	54.008
SRR1811619	moderate drought stress	53.796

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.405
DRR006520	Root Summer glycyrrhizin high producing strain	45.027
DRR006521	Root Winter glycyrrhizin high producing strain	26.692
DRR006522	Root Winter glycyrrhizin high producing strain	26.058
DRR006523	Root Summer glycyrrhizin low producing strain	43.079
DRR006524	Root Summer glycyrrhizin low producing strain	42.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.007
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.166

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.783
SRR2868004	Drought Stress (root)	44.211
SRR2967015	Control (root)	55.435

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.672
SRR9715740	Leaf	15.833
SRR9715741	Leaf	20.006
SRR9715739	Root	30.511
SRR9715742	Root	37.087
SRR9715743	Root	32.064

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.167
SRR8749028	MeJA induced 9h	57.459
SRR8749029	MeJA induced 9h	48.657
SRR8749030	Uninduced	18.822
SRR8749031	Uninduced	10.868
SRR8749032	Uninduced	17.594

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.510
SRR8400027	Control - Root	59.177