Gene detail

Gene detail information of Glyur000141s00009816

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G59030.1	1.00E-136	MATE efflux family protein
NR	XP_004491273.1	0	PREDICTED: protein TRANSPARENT TESTA 12-like [Cicer arietinum]
COG	YP_007121732.1	7.00E-06	efflux protein, MATE family [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	0	Protein TRANSPARENT TESTA 12
trEMBL	tr\|I1M721\|I1M721_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000141s00009816.1
ATGGGTTCAGTGGAGGAGCAACCATTGCTACTGGGGCTTGACTCACACACAAGGATTGCCAATTTGTCATCAGATGCAGTTGAGGAATTCTTGGAACACAAGCCAATTGGGTTGAGATGGTGGGCTAAGCTTGTTGCATGGGAGTCAAGGCTCCTCTGGATCCTCTCTGGGGCTTCCATCATTGTCTCCATTTTCACTTTTTTGTTATCCTTTGTGACCTTGATGTTTACTGGCCATTTGGGGGCTGTTGANCTTGCTGGGGCATCCATTGCTAGTCTGGGGATGGCAAGTGCAGTGCAAACTGTGTGTGGGCAAGCATATGGGGCCAAAAAGTATGCATCAATGAGCATCATATTGCAAAGAGCAATCGTCTTACACATTGGTGCAGCAGTGATCCTCACATTTCTCTATTGGTTCTCTGGTGATTTCCTGAAAGTCATAGGGCAGGAAGAGAGCATAGCAGAGAAAGGCCAACTCTTTGCAAGAGGACTCATCCTTCAGCTCTATGCATTTGCAATAAGCTGCCCCATGCAGAGGTTCCTCCAAGCACAGAACATTGTGAACCCTCTTGCTTATATGGCAGTTGGGGTATTCCTTTTGCATGTGCTTCTCTCCTGGCTAGTTGTCTATGTTTTGGGGTATGGCCTTCTTGGGGCAGCCTTTATTCTCAGCTTCTCTTGGTGGCTTCTTGTCTTTATAAATGGGTTGTACATCCTTCTTAGCCCAAGATGCAAGGAAACTTGGACTGGCTTCACTATAAAAGCCCTCACAGGAATTTGGCCTTATTTCAAGCTCACAGTTGCTTCTGCTGTCATTTTGGAGATATGGTACAGTCAGGGACTAGTGCTTATATCAGGGCTGCTCTCCAATCCCACAATAGCACTGGATTCTATTTCCATTTGTATGAATTACTTGAACCTCGACATGCAGTTTATGTTGGGCCTTGCTGCAGCAACCAGTGTCCGAATTAGCAATGAATTAGGAGCATCTCATCCAAGAGTAGCAAAATTTTCTGTCTTTGTGGTGGTTGGAACCAGCATCCTCATTAGCANAGTTTTCAGCATCATCATTTTGACATGCCGGGTTGCTTTGAGCCATCTTTTCACTTCTGACTCTGAAGTCATTGAGGCTGTATCTGACTTGACTCCATTGCTTGCCNTCTCGGGCATCTGGTGGGGATTGATCCTTGGAGTTCTTATACAGACAGTTGAAAAAGCAGTTGTTCGCATCAAGAGATCTGCCGAAAATGATACCTTAGATCAACTGGGTGTCGACGTGTAGGGGCATTTCTCTTCTCTTTTTCTCTTAGGCATGGTAGAAAGATTGAACTTGTTTTCGGCTACAGGGATACTATTGATGGCTTTCTTCTCTCTCTAGTCTCTATCAGTTCAAGNAATTTTGAGAATCAAATAATGAAACCCATTTTCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00141	104227	108876	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000141s00009816.1	PF01554.13	MatE	59	207	3.30E-21
Glyur000141s00009816.1	PF01554.13	MatE	269	392	6.00E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.984
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.279

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.035
SRR2967015	Control (root)	0.034

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.211
SRR9715740	Leaf	2.519
SRR9715741	Leaf	7.134
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.047
SRR8400027	Control - Root	0.038