Gene detail

Gene detail information of Glyur000141s00009815.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43020.1	0	polyamine oxidase 2
NR	XP_004491274.1	0	PREDICTED: probable polyamine oxidase 2-like isoform X1 [Cicer arietinum]
COG	YP_006874256.1	2.00E-66	amine oxidase [Emticicia oligotrophica DSM 17448]
Swissprot	tr\|Q9SKX5\|PAO2_ARATH	0	Probable polyamine oxidase 2
trEMBL	tr\|G7KD02\|G7KD02_MEDTR	0	Polyamine oxidase-like protein {ECO:0000313\|EMBL:AET00277.1}

Sequence

Transcript Sequence

>Glyur000141s00009815.1
AAGCTGCAACAACTCCTGACTCNCGTTTCGTACCGATTAAAATATTGCACCTCACCTCACCTTTATTTTATTTTTCTTTTCTTTTCCCTTTCCCCTTTCTCTCTGAATTTTCTGGGAAACCAAACACCGACCAAACCCTCTCACTTTCCTCCTGCAAAATCTCCATAACCAATAGCGATATCCGCTTGGTATCTTCGCGATCCGGTCGAGCTGAGAGAGAGAGAGTGGTTTGGTGCTTTGAAAAAACTTAGCTGCATGAGCTGGTTTGGGAAGCTGCGTTTATTCTCCAACCTAAACTCATTTCGCTTCATTTCCTGTTTGTTAATTTTTATCCCTCATTTCTCACCTCAATCGCGTTCTCCTTTCTTCAATCTCATCAGCAATTCCCTCGAACCGTTGTTATTAATCGATAATANTAATATTAATATTATTAATAGTAATCTCAATCGTAATTGCGGATTGTCTTCTCACTATGGAGTCCCGAATTAAGAGTAATCCTCAATTGCGCAAAGGTCTTTGCTATGCAAACGAGGACCGGCAGCGTGAAAGGTCACCGTCTGTTATTGTCATAGGCGGTGGCATGGCAGGGATTGCTGCTGCTCGNGCACTTTATGATGCCTCATTTCAGGTTGTTCTCTTAGAATCACGGGAAAGACTTGGTGGCCGAATTCACACTGATTACTCCTTTGGCTTTCCTATTGACCTAGGTGCATCATGGTTGCATGGAGTTTGCAAGGAGAATCCACTGGCTCCATTGATTGGGAGGCTGGGGCTACCTCTTTATCGGACTAGTGAGGATAACTCTGTCCTTTATGATCATGATTTGGAAAGCTATGCTCTCTTTGATATGGATGGGAACCAAGTTCCACAAGAGTTGGTAACAAAAGTTGGTATACAATTTGAAACGATTTTGCAAGAGACAGATAATGTACGACAGGAATTCAGTGAAGACATGTCCATATTCCGTGCAATTTCAATTGTTTTTGAAAGAAAGCCAGAATTGAGATTGGAGGGGCTTGCACACAAGGTGTTTCAGTGGTATTTATGCAGAATGGAGGGCTGGTTTGCTGCAGATTCTGAAGCCATATCACTGAAATGTTGGGACCAGGAAGAATTGCTCCCNGGAGGTCATGGTCTTATGGTAAGGGGCTACCTGCCTGTTATACATACCCTAGCCAAGGGTCTTGACATTCGCCTGGGACACAGGGTCACAAAAATAGTTAGGCGATATAATGGAGTAAAGGTGACTGTGGAAAATGGGAAAACATTTATCGCTGATGCTGTTATTATTACTGTACCTCTTGGGGTGCTGAAAGCAAAGAGCATAAAATTTGAGCCAAAGCTCCCAGACTGGAAAGAAGCTGCCATTGCTGATATTGGAGTCGGGGTTGAGAATAAAATAATTTTGCACTTTAAAAATGTATTTTGGCCTAATGTGGAGTTCCTGGGAGTAGTTGCTGAGACATCTTATGGATGCAGTTACTTTCTTAATCTCCACAAAGCTTCAGGTCATCCTGTCCTTGTTTACATGCCTTCTGGGAAGCTGGCCAAAGACATTGAGAAAATGTCTGATGAAGCAGCTGTTAACTTTGCTTTCATGCAGCTCAAGAAGATCCTTCCAGATGCTTCTTCACCGATTCNGTATCTTGTGTCTCGGTGGGGTACGGATATTAATTCACTAGGTTCCTATAGCTATGACGCAGTTGGGAAACCACACGATCTGTATGAGAGGCTGCGGGTCCCTGTAGATAACGTATTCTTTGCAGGGGAAGCAACCAGTTTGTTATATACAGGGTCTGTGCATGGTGCATACTCTACTGGGGTGATGGCTGCTGAGGACTGCAGGATGCGTGTTCTGGAGCGCTATGGGGAGCTAGATTTGTTCCAGCCAGTGTTGGAAGATGAGGCTTCAGTTATACCACTTTTGATCTCTCGTTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00141	98983	103244	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17839	PAO4, PAO3, PAO2	EC:1.5.3.17 1.5.3.-	Arginine and proline metabolism	map00330
			beta-Alanine metabolism	map00410

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000141s00009815.1	PF01593.19	Amino_oxidase	37	456	7.00E-99

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.748
SRR1783600	control	11.804
SRR1783602	moderate drought stress	8.869
SRR1811619	moderate drought stress	8.870

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.691
DRR006520	Root Summer glycyrrhizin high producing strain	24.078
DRR006521	Root Winter glycyrrhizin high producing strain	43.734
DRR006522	Root Winter glycyrrhizin high producing strain	48.150
DRR006523	Root Summer glycyrrhizin low producing strain	24.707
DRR006524	Root Summer glycyrrhizin low producing strain	23.894
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.072
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.717

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	43.613
SRR2868004	Drought Stress (root)	44.849
SRR2967015	Control (root)	57.475

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.222
SRR9715740	Leaf	29.903
SRR9715741	Leaf	25.215
SRR9715739	Root	4.732
SRR9715742	Root	13.900
SRR9715743	Root	12.683

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	24.196
SRR8749028	MeJA induced 9h	33.706
SRR8749029	MeJA induced 9h	23.201
SRR8749030	Uninduced	33.932
SRR8749031	Uninduced	40.237
SRR8749032	Uninduced	34.889

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.915
SRR8400027	Control - Root	47.871