Gene detail information of Glyur000141s00009813 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G43010.2 | 7.00E-19 | phytochrome interacting factor 4 |
| NR | XP_003545154.1 | 8.71E-152 | PREDICTED: transcription factor PIF4-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8GZM7|PIF1_ARATH | 2.00E-22 | Transcription factor PIF1 |
| trEMBL | tr|I1M718|I1M718_SOYBN | 3.00E-152 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G03600.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00141 | 85771 | 88369 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000141s00009813.1 | PF00010.21 | HLH | 340 | 366 | 8.60E-07 |
| Glyur000141s00009813.2 | PF00010.21 | HLH | 303 | 329 | 7.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.038 |
| SRR1783600 | control | 0.039 |
| SRR1783602 | moderate drought stress | 0.021 |
| SRR1811619 | moderate drought stress | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.304 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.352 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.060 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.460 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.611 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.643 |
| SRR2868004 | Drought Stress (root) | 2.013 |
| SRR2967015 | Control (root) | 0.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 19.841 |
| SRR9715740 | Leaf | 25.627 |
| SRR9715741 | Leaf | 32.995 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.060 |
| SRR9715743 | Root | 0.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.303 |
| SRR8749031 | Uninduced | 0.062 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.384 |
| SRR8400027 | Control - Root | 0.517 |