Gene detail information of Glyur000141s00009809 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06680.1 | 8.00E-98 | photosystem II subunit P-1 |
| NR | XP_003532074.1 | 7.76E-141 | PREDICTED: oxygen-evolving enhancer protein 2, chloroplastic-like [Glycine max] |
| Swissprot | tr|P16059|PSBP_PEA | 2.00E-131 | Oxygen-evolving enhancer protein 2, chloroplastic (Precursor) |
| trEMBL | tr|I1KXW9|I1KXW9_SOYBN | 3.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G41660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00141 | 63021 | 65789 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000141s00009809.1 | PF01789.11 | PsbP | 26 | 216 | 6.10E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.222 |
| SRR1783600 | control | 0.167 |
| SRR1783602 | moderate drought stress | 0.340 |
| SRR1811619 | moderate drought stress | 0.286 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.665 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.648 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.123 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.846 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.848 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 382.157 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 376.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.403 |
| SRR2868004 | Drought Stress (root) | 12.424 |
| SRR2967015 | Control (root) | 3.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 308.067 |
| SRR9715740 | Leaf | 345.491 |
| SRR9715741 | Leaf | 326.635 |
| SRR9715739 | Root | 0.114 |
| SRR9715742 | Root | 1.159 |
| SRR9715743 | Root | 0.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 23.170 |
| SRR8749028 | MeJA induced 9h | 6.691 |
| SRR8749029 | MeJA induced 9h | 8.277 |
| SRR8749030 | Uninduced | 9.341 |
| SRR8749031 | Uninduced | 0.898 |
| SRR8749032 | Uninduced | 18.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.793 |
| SRR8400027 | Control - Root | 4.355 |