Gene detail information of Glyur000141s00009804 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19645.2 | 1.00E-107 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein |
| NR | NP_001242831.1 | 0 | uncharacterized protein LOC100817391 [Glycine max] |
| trEMBL | tr|C6T9X3|C6T9X3_SOYBN | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ACU18625.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00141 | 36145 | 39824 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000141s00009804.1 | PF03798.11 | TRAM_LAG1_CLN8 | 71 | 264 | 1.30E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.723 |
| SRR1783600 | control | 3.643 |
| SRR1783602 | moderate drought stress | 5.326 |
| SRR1811619 | moderate drought stress | 5.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.211 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.806 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.946 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.598 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.403 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.955 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.252 |
| SRR2868004 | Drought Stress (root) | 11.043 |
| SRR2967015 | Control (root) | 9.953 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.709 |
| SRR9715740 | Leaf | 5.239 |
| SRR9715741 | Leaf | 4.239 |
| SRR9715739 | Root | 4.266 |
| SRR9715742 | Root | 5.323 |
| SRR9715743 | Root | 5.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.553 |
| SRR8749028 | MeJA induced 9h | 9.748 |
| SRR8749029 | MeJA induced 9h | 6.508 |
| SRR8749030 | Uninduced | 5.769 |
| SRR8749031 | Uninduced | 5.256 |
| SRR8749032 | Uninduced | 2.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.395 |
| SRR8400027 | Control - Root | 13.988 |