Gene detail

Gene detail information of Glyur000141s00009798

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45110.1	5.00E-155	NPR1-like protein 3
NR	XP_003617362.1	0	NPR1-1 protein [Medicago truncatula]
Swissprot	tr\|Q8L746\|NPR3_ARATH	0	Regulatory protein NPR3
trEMBL	tr\|G7K396\|G7K396_MEDTR	0	NPR1/NIM1-like regulatory protein, putative {ECO:0000313\|EMBL:AET00321.1}

Sequence

Transcript Sequence

>Glyur000141s00009798.1
GTGAGTTTCGGTTGTTGAACATCATTGGCCAAGGTCTCTCTCTCTCTTGTTGGGTCTATCTTTGTTCATTGTTTCACTTTCTCTCTCCCTTCTTAGTCTTCGCTTCGTTGGTTGGAAAGGACTTAAACCTTAAGCATTCTTGATGTGAAGCCATCCATCTTCAGTTTCTCTGGTTTTGTAGCCTTTTGAAGCTTCCAGGGTCAACTTTATCTCTGTTTCATTCTCTGAAGCTGCTGCTGCTGAGTTCTTCTTCAATCTCCACTCGAAGGGTGGCACTGTATGTAATATTTGGTTCTTCTTTTCCTCTCTTACCCACATCAGTTAAGTGCTAGAAGTTCACACTTTTTCATTCCCACTACTCAATATATTTAATGGGTCACCAGATTGACCACCATACTACAAATAATCTCAATTTTTGTTTCTGGGAATCTGACTTTTGTTGCTTGACTTGCAAGTGATTATGGTTGGAGAAAAGTCCCTTTTATAATTTTGCTTATAGAATATGTTGTGGCTAGCTTTTCCATTGAGTTGGGGNTCCTTAAAGGGGTGTGATTGATTTCTTCTTTTGCTTCTAAATTGAAGTCAAACAATAACCCTTTGACTCAATTGGAACCTGTGATTTATTATTTGGGGGTCATGGATAATACAAACGAGGAATCATCATCCTTGAGTTTTGTATCATCTCACTTGTCAAATGGTTCTAGTAATAACCACAACATATCTTCCTCCACCACTAGCAATGAAAATGGGGCAAATATTGAAGTTNTGAGTTTGAATAAGCTCAGTGGAAGCCTTGAGAAGTTGTTTAGTGATGCTGAATATGATTATAGTGATGCTGAGATTCTTGTTGAGGACATCCCTGTGGGAATTCATCGCTGTATATTGGCCTCACGTAGTCAGTTTTTTCATGATCTTTTTAAGAAAGGGGGAAGTGATGGATCAGTGAAGGAAGGGAAGCCAAGGTATCTCATGTCAGATTTGGTGCCNTATGGTACAGTTGGGTATGAAGCTTTCCTTGCTTTCTTGCATTATGTGTATACTGGAAGGCTAAAGGCTTTACCTTCAGAGGTGACAACATGTGTTGATGAANCATGTGTTCATGATGCATGCCGCCCTGCCATCAATTATGCTTTGGAACTTATGTATGCTTCTGCCACTTTTCAGATGAAAGAGCTGGTTTTAGTTTTTCAGCGGCATCTCCTAAATTTCGTTGAGAAGGCTCTTGTAGAAGATGTCATTCCTATTCTTATNGCTGCATACAACTGCCAACTGAACCAGCTTCTCTCTCAGTGCATTCAGAGAGTAGCAAGGTCTNACCTTGACAGCATATCTTTGGAAAAAGAACTTCCTCATGAAGTTGCAACCGAAATCAAATCACTCCGAGTCCAATCCACACCGGAATCCACACCTGATGCATTGGAAGTGGAACCTTCGAATGACAAGAGTATCAGGAACNTCCTTAAAGCATTGGACTCGGATGATGTTGAGCTACTGAAGCTTCTTTTAAATGAATCCACTAGTGTCACTCTAGATGATGCCTATGCCCTGCATTATGCCTGTGCATATTGTGATTCTAAGGTTGTTCAAGAAGTTCTTACTCTAGGCTTGGCTGATATTCTCCTTAAGAATCCGCGAGGATACACGGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCCATTTTGGTGGCACTGCTGAAGAAAGGGGCCTGTGCATCAGAAACCACTAGGGATGGACAAACTGCTCTTTCGATTTGTCAGAGGTTGACCAGACGCAAGGATTATCATGAGAAAACGGTGCAGGGGAAGGAATCTCACAAGGACAGGCTGTGTGTTGATGTATTGGAGAGAGAGATGAGAAGAAATTCAATGTCAGTGGATTTGTCTGTTCTGTCACAGCTAAGTGCTGATGACTTGCACATGAGACTGGATTACCTTGAAAATAGAGTTGCATTTGCTAGGCTGTTGTTTCCTGCTGAGGCTAGGGTAGCCATAGAGAATGCTGAGGCAGATTCCACAACGCTGTGTGCAAGTTCATCAGCTTTATTGAGCAATNGGAAAGGAGTAGATCTAAACGAAACTCCTTCTGTTCGAACCAGAAAACTCCAGTTAAAATTGCATGCCCTTGTAAAAACAGTTGAGAATGGTATGCGCTTCTTTCCCCATTGTTCTGAGGTGCTTGACAAGTTTCTGGAAGACGACATGCCTGACGTTTTCTTCCTAGACAAGGGCAGTGAGGAAGAGCAGAGAATCAAGAAAACGCGATTCATGGAACTTAAAGATGAGGTGCAGAAGGCATTTCACAAGGATATGGCTGAAAACAACCATTCAGGTTTTTCATCTTCAGTGACTACCTCATCATCCTCAACTCGTAGGGATGGTCTTAACCACAAAGTGAGGAAAAAAATNAAAGTCCATCTTCTCCTAGAGTGAGATTGCTAAAAGTTTTGGCTTTTTGGAATAGTGTTGCAACTTGCAAGTAGCAACAGTATAGCATATATTTTGCCAATAAGATGCCATGTTACATCATGGGAGATTTTTGCTAGCTTAATTTACTTGCTTACAATTGTTGCACAAAAAAAAAAGTAAAAGAAGGGAAGGAAGATGCAGTACATTTGTTCCTTCAAAATTGGTGAATCATGTAATATATATGTGTAGGATATGAACCATACCCCCAAAAGTATTCACTTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00141	15330	19695	-

Gene family

Gene family	subfamily
Transcription Factors Family	TRAF
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000141s00009798.1	PF00651.26	BTB	62	141	1.10E-10
Glyur000141s00009798.1	PF11900.3	DUF3420	228	273	1.50E-10
Glyur000141s00009798.1	PF12796.2	Ank_2	277	358	5.10E-09
Glyur000141s00009798.1	PF12313.3	NPR1_like_C	375	573	3.10E-81

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	25.529
SRR1783600	control	25.556
SRR1783602	moderate drought stress	33.609
SRR1811619	moderate drought stress	33.765

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.031
DRR006520	Root Summer glycyrrhizin high producing strain	18.048
DRR006521	Root Winter glycyrrhizin high producing strain	13.446
DRR006522	Root Winter glycyrrhizin high producing strain	12.930
DRR006523	Root Summer glycyrrhizin low producing strain	14.569
DRR006524	Root Summer glycyrrhizin low producing strain	14.811
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.794
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.834

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	49.809
SRR2868004	Drought Stress (root)	68.526
SRR2967015	Control (root)	66.219

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.476
SRR9715740	Leaf	50.706
SRR9715741	Leaf	43.269
SRR9715739	Root	26.426
SRR9715742	Root	51.392
SRR9715743	Root	46.883

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.232
SRR8749028	MeJA induced 9h	17.911
SRR8749029	MeJA induced 9h	10.130
SRR8749030	Uninduced	15.134
SRR8749031	Uninduced	8.344
SRR8749032	Uninduced	9.453

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	58.239
SRR8400027	Control - Root	47.502