Gene detail information of Glyur000140s00011482 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G45600.2 | 4.00E-101 | YEATS family protein |
| NR | XP_003517178.1 | 0 | PREDICTED: transcription initiation factor TFIID subunit 14b-like [Glycine max] |
| Swissprot | tr|Q9FH40|TA14B_ARATH | 6.00E-126 | Transcription initiation factor TFIID subunit 14b |
| trEMBL | tr|K7K485|K7K485_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G37160.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00140 | 233963 | 236180 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000140s00011482.1 | PF03366.11 | YEATS | 76 | 156 | 7.70E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.345 |
| SRR1783600 | control | 12.529 |
| SRR1783602 | moderate drought stress | 13.359 |
| SRR1811619 | moderate drought stress | 13.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.958 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.950 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.054 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 17.117 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.583 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.808 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.549 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.615 |
| SRR2868004 | Drought Stress (root) | 25.642 |
| SRR2967015 | Control (root) | 26.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.945 |
| SRR9715740 | Leaf | 25.811 |
| SRR9715741 | Leaf | 16.554 |
| SRR9715739 | Root | 12.624 |
| SRR9715742 | Root | 8.039 |
| SRR9715743 | Root | 6.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.624 |
| SRR8749028 | MeJA induced 9h | 20.839 |
| SRR8749029 | MeJA induced 9h | 19.769 |
| SRR8749030 | Uninduced | 12.373 |
| SRR8749031 | Uninduced | 5.169 |
| SRR8749032 | Uninduced | 9.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.010 |
| SRR8400027 | Control - Root | 26.447 |